Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056I09.5 |
| Conread position: | 334-936 |
| Cow position: | chr4:65121407-65122008 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 346-1003 |
| Cow position: | chr4:65495333-65494645 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 417 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 90 |
| Conread position: | 355-793 |
| Cow position: | chr4:65350358-65350794 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 357-992 |
| Cow position: | chr4:65703604-65702968 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 359-709 |
| Cow position: | chr4:65350443-65350794 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 375-909 |
| Cow position: | chr4:65349875-65350409 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 334 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 376-667 |
| Cow position: | chr4:65261469-65261178 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 209, 221 |
| Conread position: | 379-631 |
| Cow position: | chr4:65494681-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 379-879 |
| Cow position: | chr4:65261634-65261133 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 326 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 380-965 |
| Cow position: | chr4:65261719-65261131 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 8 |
| Conread position: | 386-911 |
| Cow position: | chr4:65121542-65122067 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 388-628 |
| Cow position: | chr4:65157942-65158182 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 44 |
| Conread position: | 388-1007 |
| Cow position: | chr4:65146431-65147053 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 385 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 139, 149 |
| Conread position: | 389-1005 |
| Cow position: | chr4:65350057-65350670 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 196 |
| Conread position: | 391-961 |
| Cow position: | chr4:65350227-65350794 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 258 |
| Conread position: | 391-967 |
| Cow position: | chr4:65495011-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 125 |
| Conread position: | 392-804 |
| Cow position: | chr4:65702863-65702453 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 393-1006 |
| Cow position: | chr4:65349977-65350587 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 216 |
| Conread position: | 398-679 |
| Cow position: | chr4:65546415-65546133 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 409-835 |
| Cow position: | chr4:65702927-65702504 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 181, 28 |
| Conread position: | 422-1006 |
| Cow position: | chr4:65349838-65350422 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 440-628 |
| Cow position: | chr4:65121203-65121391 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 447-963 |
| Cow position: | chr4:65146575-65147093 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 96, 5 |
| Conread position: | 453-682 |
| Cow position: | chr4:65121132-65121361 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 456-796 |
| Cow position: | chr4:65157833-65158182 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 458-836 |
| Cow position: | chr4:65146417-65146793 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 217, 230 |
| Conread position: | 458-1006 |
| Cow position: | chr4:65495301-65494726 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 368 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 459-1006 |
| Cow position: | chr4:65261725-65261175 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 147 |
| Conread position: | 461-978 |
| Cow position: | chr4:65703667-65703151 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 126 |
| Conread position: | 467-1006 |
| Cow position: | chr4:65495019-65494474 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 130 |
| Conread position: | 484-1008 |
| Cow position: | chr4:65349816-65350340 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 340 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 510-754 |
| Cow position: | chr4:65121102-65121349 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 542-986 |
| Cow position: | chr4:65702881-65702440 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 239 |
| Conread position: | 545-1003 |
| Cow position: | chr4:65703667-65703209 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 51 |
| Conread position: | 576-1007 |
| Cow position: | chr4:65702934-65702500 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 598-1007 |
| Cow position: | chr4:65121586-65121995 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 254 |
| Conread position: | 624-961 |
| Cow position: | chr4:65157833-65158179 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 51, 55 |
| Conread position: | 626-1008 |
| Cow position: | chr4:65349790-65350172 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 82 |
| Conread position: | 629-1006 |
| Cow position: | chr4:65703667-65703290 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 639-1007 |
| Cow position: | chr4:65121543-65121911 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 644-1007 |
| Cow position: | chr4:65120978-65121350 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 708-1006 |
| Cow position: | chr4:65157833-65158140 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 710-1007 |
| Cow position: | chr4:65146417-65146714 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 713-1007 |
| Cow position: | chr4:65703667-65703373 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 719-937 |
| Cow position: | chr4:65121146-65121364 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 31 |
Show alignments to all cow chromosomes.