Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8059M19.5 |
| Conread position: | 1-196 |
| Cow position: | chrX:25173328-25173526 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 95, 56 |
| Conread position: | 1-220 |
| Cow position: | chrX:3014918-3015134 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 99, 56 |
| Conread position: | 1-264 |
| Cow position: | chrX:983161-983429 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 1-351 |
| Cow position: | chrX:39563435-39563074 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 106, 33 |
| Conread position: | 1-417 |
| Cow position: | chrX:27390683-27390256 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 99, 56 |
| Conread position: | 1-420 |
| Cow position: | chrX:16276148-16276583 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 108, 58 |
| Conread position: | 1-420 |
| Cow position: | chrX:24562871-24562443 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 294 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 95, 24 |
| Conread position: | 2-254 |
| Cow position: | chrX:31198950-31199207 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 2-264 |
| Cow position: | chrX:13412632-13412365 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 91, 57 |
| Conread position: | 2-284 |
| Cow position: | chrX:20794382-20794093 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 94, 43 |
| Conread position: | 2-351 |
| Cow position: | chrX:12669249-12668891 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 94, 57 |
| Conread position: | 2-402 |
| Cow position: | chrX:26528478-26528893 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 2-434 |
| Cow position: | chrX:23040622-23040176 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 3-253 |
| Cow position: | chrX:20506040-20506294 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 54 |
| Conread position: | 3-352 |
| Cow position: | chrX:17727099-17727457 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 87, 52 |
| Conread position: | 3-397 |
| Cow position: | chrX:21971335-21971731 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 93, 53 |
| Conread position: | 6-257 |
| Cow position: | chrX:3625819-3626071 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 112, 43 |
| Conread position: | 7-253 |
| Cow position: | chrX:13053511-13053762 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 55 |
| Conread position: | 20-293 |
| Cow position: | chrX:10991078-10991349 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 42-351 |
| Cow position: | chrX:2264943-2264637 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 70-221 |
| Cow position: | chrX:23933255-23933104 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 75-403 |
| Cow position: | chrX:21732190-21731844 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 78-403 |
| Cow position: | chrX:24523341-24523664 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 160, 59 |
| Conread position: | 99-277 |
| Cow position: | chrX:39057673-39057852 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 139, 123 |
| Conread position: | 99-281 |
| Cow position: | chrX:18767771-18767959 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 181 |
| Conread position: | 108-241 |
| Cow position: | chrX:12066646-12066780 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 115-429 |
| Cow position: | chrX:8940148-8939825 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 124, 50 |
| Conread position: | 126-401 |
| Cow position: | chrX:23389889-23389599 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 112, 184 |
| Conread position: | 126-403 |
| Cow position: | chrX:23277654-23277945 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 112, 184 |
Show alignments to all cow chromosomes.