Cow genome map

Conread name: Ss1.1-Pig4-TMW8061D03.3

Conread position: 1-317
Cow position: chr14:25860449-25860765 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 199
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 137, 144

Conread position: 1-318
Cow position: chr14:447930-448247 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 210
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1-329
Cow position: chr14:3156155-3156485 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 217
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 215, 229

Conread position: 1-335
Cow position: chr14:25836892-25837226 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 205
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 65

Conread position: 1-344
Cow position: chr14:25877500-25877844 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 217
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 137, 144

Conread position: 1-376
Cow position: chr14:680900-681275 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 237
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 49, 61

Conread position: 1-417
Cow position: chr14:3127681-3127264 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 272
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 117, 111

Conread position: 1-419
Cow position: chr14:433983-434401 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 206

Conread position: 1-424
Cow position: chr14:3155414-3155837 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 275
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 48, 59

Conread position: 1-459
Cow position: chr14:25836724-25837182 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 274
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-459
Cow position: chr14:25877332-25877790 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 281
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 132, 141

Conread position: 1-462
Cow position: chr14:3127765-3127304 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 281

Conread position: 1-495
Cow position: chr14:3100832-3100340 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 287
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 224, 229

Conread position: 1-503
Cow position: chr14:3080169-3079667 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 141

Conread position: 1-530
Cow position: chr14:3100998-3100471 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 319
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 262, 116

Conread position: 1-530
Cow position: chr14:3127849-3127320 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 201

Conread position: 1-580
Cow position: chr14:433815-434394 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 229

Conread position: 1-587
Cow position: chr14:3061232-3060647 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 109

Conread position: 1-623
Cow position: chr14:3061568-3060946 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 136

Conread position: 1-623
Cow position: chr14:25877164-25877786 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 364
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 284, 276

Conread position: 1-624
Cow position: chr14:447594-448216 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 564, 552

Conread position: 1-624
Cow position: chr14:25895455-25896078 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 43

Conread position: 1-637
Cow position: chr14:25859525-25860161 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 372
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 62

Conread position: 1-637
Cow position: chr14:25876576-25877212 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 141

Conread position: 1-657
Cow position: chr14:3061316-3060659 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 277

Conread position: 1-686
Cow position: chr14:25859861-25860546 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 393
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 130, 157

Conread position: 1-686
Cow position: chr14:25876912-25877597 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 398
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 133, 157

Conread position: 1-688
Cow position: chr14:3101247-3100565 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 409
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 132, 136

Conread position: 1-709
Cow position: chr14:25876828-25877536 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 415
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 221, 229

Conread position: 1-710
Cow position: chr14:25836388-25837097 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 407
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 274, 268

Conread position: 1-710
Cow position: chr14:25860029-25860738 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 138

Conread position: 1-710
Cow position: chr14:25894951-25895660 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 27

Conread position: 1-713
Cow position: chr14:3080925-3080213 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 46

Conread position: 1-714
Cow position: chr14:3080421-3079708 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 229

Conread position: 1-714
Cow position: chr14:25836052-25836765 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 414
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 543, 547

Conread position: 1-714
Cow position: chr14:25895119-25895832 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 641, 649

Conread position: 1-714
Cow position: chr14:25895203-25895916 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 453, 445

Conread position: 1-723
Cow position: chr14:25895707-25896427 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 432
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 130, 145

Conread position: 1-725
Cow position: chr14:25876744-25877468 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 304

Conread position: 1-725
Cow position: chr14:25895035-25895759 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 469

Conread position: 1-726
Cow position: chr14:3080757-3080034 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 279

Conread position: 1-728
Cow position: chr14:25876492-25877220 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 41

Conread position: 1-735
Cow position: chr14:3080589-3079855 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 262

Conread position: 1-741
Cow position: chr14:3080673-3079932 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 132

Conread position: 1-741
Cow position: chr14:25895371-25896111 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 145

Conread position: 1-743
Cow position: chr14:3128101-3127359 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 201

Conread position: 3-402
Cow position: chr14:447848-448247 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 139

Conread position: 3-457
Cow position: chr14:680818-681272 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-530
Cow position: chr14:680734-681261 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 25

Conread position: 3-711
Cow position: chr14:3061650-3060942 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 25

Conread position: 3-715
Cow position: chr14:680398-681110 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 27

Conread position: 3-735
Cow position: chr14:3061734-3061002 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 227

Conread position: 3-741
Cow position: chr14:3061398-3060659 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 14

Conread position: 3-743
Cow position: chr14:680482-681222 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 275

Conread position: 3-743
Cow position: chr14:3080503-3079763 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 205

Conread position: 4-743
Cow position: chr14:3128014-3127275 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 540, 531

Conread position: 5-722
Cow position: chr14:3101327-3100615 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 428
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 44, 58

Conread position: 7-628
Cow position: chr14:680654-681275 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 21

Conread position: 8-680
Cow position: chr14:25876331-25877003 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 397
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 69, 86

Conread position: 13-456
Cow position: chr14:3156083-3156528 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 31

Conread position: 17-459
Cow position: chr14:25860297-25860739 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 269
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 32, 40

Conread position: 17-623
Cow position: chr14:25836572-25837178 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 358
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 205, 213

Conread position: 17-715
Cow position: chr14:25835984-25836682 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 422
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 32, 57

Conread position: 19-579
Cow position: chr14:3155921-3156481 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 342
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 18, 11

Conread position: 19-623
Cow position: chr14:25859291-25859895 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 353
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 114, 129

Conread position: 19-710
Cow position: chr14:25836154-25836845 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 406
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 43, 20

Conread position: 19-735
Cow position: chr14:3080823-3080107 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 345

Conread position: 19-743
Cow position: chr14:680246-680970 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 343

Conread position: 21-636
Cow position: chr14:3080319-3079702 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 295

Conread position: 22-708
Cow position: chr14:3128164-3127479 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 643, 650

Conread position: 33-714
Cow position: chr14:3061452-3060771 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 197

Conread position: 41-456
Cow position: chr14:3100876-3100461 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 260
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 106, 102

Conread position: 52-383
Cow position: chr14:663431-663100 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 210
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 81, 85

Conread position: 52-675
Cow position: chr14:433782-434405 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 386
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 33

Conread position: 52-751
Cow position: chr14:680363-681062 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 228

Conread position: 55-735
Cow position: chr14:447564-448244 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 223

Conread position: 60-641
Cow position: chr14:25859836-25860417 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 343
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 162, 170

Conread position: 61-709
Cow position: chr14:25876300-25876948 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 380
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 78, 85

Conread position: 61-730
Cow position: chr14:3101438-3100775 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 393
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 74

Conread position: 73-707
Cow position: chr14:25859261-25859895 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 362
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 226, 221

Conread position: 81-707
Cow position: chr14:3061740-3061114 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 233

Conread position: 81-743
Cow position: chr14:680224-680886 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 200

Conread position: 82-508
Cow position: chr14:3155411-3155837 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 286
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 64, 59

Conread position: 82-710
Cow position: chr14:25836553-25837181 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 382
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 225, 232

Conread position: 82-714
Cow position: chr14:25894948-25895580 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 384
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 56, 30

Conread position: 85-743
Cow position: chr14:3081010-3080351 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 38

Conread position: 97-743
Cow position: chr14:3128173-3127527 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 169

Conread position: 144-457
Cow position: chr14:663423-663110 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 196
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 86

Conread position: 145-743
Cow position: chr14:447570-448168 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 217

Conread position: 156-741
Cow position: chr14:433801-434387 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 125

Conread position: 157-708
Cow position: chr14:25859261-25859812 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 327
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 69

Conread position: 159-714
Cow position: chr14:25894941-25895496 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 332
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 222, 227

Conread position: 163-735
Cow position: chr14:3061742-3061170 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 343
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 60, 67

Conread position: 171-743
Cow position: chr14:447512-448084 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 124

Conread position: 225-743
Cow position: chr14:680200-680718 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 313
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 10

Conread position: 309-735
Cow position: chr14:680200-680626 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 274
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 28, 40

Conread position: 331-744
Cow position: chr14:3061742-3061329 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 249
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 123, 115

Show alignments to all cow chromosomes.