Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8061D03.3 |
| Conread position: | 1-331 |
| Cow position: | chr17:22551839-22551509 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 1-461 |
| Cow position: | chr17:22452208-22451748 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 132, 145 |
| Conread position: | 1-509 |
| Cow position: | chr17:44467865-44468373 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 1-514 |
| Cow position: | chr17:44467781-44468294 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 1-592 |
| Cow position: | chr17:41440782-41440191 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1-636 |
| Cow position: | chr17:22589929-22589294 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 378 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 1-662 |
| Cow position: | chr17:22552175-22551514 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 547 |
| Conread position: | 1-708 |
| Cow position: | chr17:22552931-22552225 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 54 |
| Conread position: | 1-711 |
| Cow position: | chr17:44467445-44468155 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 424 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1-713 |
| Cow position: | chr17:41441034-41440322 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1-713 |
| Cow position: | chr17:41441118-41440406 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1-715 |
| Cow position: | chr17:22552511-22551797 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 1-717 |
| Cow position: | chr17:22552763-22552047 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 1-725 |
| Cow position: | chr17:22552343-22551619 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 1-726 |
| Cow position: | chr17:22553099-22552374 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 1-728 |
| Cow position: | chr17:22590097-22589369 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 476 |
| Conread position: | 1-741 |
| Cow position: | chr17:41440950-41440209 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1-742 |
| Cow position: | chr17:22552427-22551686 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 546, 529 |
| Conread position: | 3-383 |
| Cow position: | chr17:22452122-22451742 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 130, 134 |
| Conread position: | 3-595 |
| Cow position: | chr17:44467699-44468291 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 361 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 4-711 |
| Cow position: | chr17:44467364-44468071 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 419 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 7-560 |
| Cow position: | chr17:22452286-22451733 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 335 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 199, 192 |
| Conread position: | 13-662 |
| Cow position: | chr17:22589833-22589184 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 388 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 108, 99 |
| Conread position: | 19-742 |
| Cow position: | chr17:22552829-22552106 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 523, 516 |
| Conread position: | 61-415 |
| Cow position: | chr17:22551863-22551509 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 61-430 |
| Cow position: | chr17:44468009-44468378 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 132, 139 |
| Conread position: | 61-708 |
| Cow position: | chr17:22552955-22552309 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 429 |
| Conread position: | 81-531 |
| Cow position: | chr17:22499394-22498944 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 386, 379 |
| Conread position: | 81-720 |
| Cow position: | chr17:22553103-22552464 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 96 |
| Conread position: | 82-688 |
| Cow position: | chr17:22552514-22551908 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 200 |
| Conread position: | 82-716 |
| Cow position: | chr17:44467610-44468244 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 374 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 214, 208 |
| Conread position: | 83-721 |
| Cow position: | chr17:22452377-22451740 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 362 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 50, 5 |
| Conread position: | 85-715 |
| Cow position: | chr17:41441118-41440488 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 157-738 |
| Cow position: | chr17:22590109-22589528 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 356 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 385, 375 |
| Conread position: | 163-682 |
| Cow position: | chr17:22553105-22552586 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 169-742 |
| Cow position: | chr17:41441118-41440545 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 118, 111 |
| Conread position: | 210-725 |
| Cow position: | chr17:22553142-22552627 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 328 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 129, 140 |
| Conread position: | 211-725 |
| Cow position: | chr17:22590223-22589709 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 217-727 |
| Cow position: | chr17:22452412-22451902 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 299 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 160, 149 |
| Conread position: | 228-707 |
| Cow position: | chr17:22499331-22498852 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 109, 121 |
| Conread position: | 262-744 |
| Cow position: | chr17:22590256-22589774 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 293-727 |
| Cow position: | chr17:22553143-22552709 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 130, 135 |
| Conread position: | 312-734 |
| Cow position: | chr17:22499331-22498909 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 269, 276 |
| Conread position: | 377-742 |
| Cow position: | chr17:22553143-22552778 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 130, 141 |
Show alignments to all cow chromosomes.