Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8061D03.3 |
| Conread position: | 1-425 |
| Cow position: | chr22:11666535-11666959 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 1-441 |
| Cow position: | chr22:12418855-12418415 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 1-447 |
| Cow position: | chr22:12458268-12457822 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 1-457 |
| Cow position: | chr22:11701189-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 1-464 |
| Cow position: | chr22:12418939-12418477 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 294 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 132, 136 |
| Conread position: | 1-623 |
| Cow position: | chr22:11640778-11641400 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 381 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 174, 194 |
| Conread position: | 1-678 |
| Cow position: | chr22:12431652-12430974 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 111 |
| Conread position: | 1-688 |
| Cow position: | chr22:12458520-12457833 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 410 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 298, 293 |
| Conread position: | 1-709 |
| Cow position: | chr22:12431736-12431028 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 410 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 303, 295 |
| Conread position: | 1-710 |
| Cow position: | chr22:11640694-11641403 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 430 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 1-710 |
| Cow position: | chr22:12476217-12475508 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 114 |
| Conread position: | 1-714 |
| Cow position: | chr22:12476049-12475336 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 420 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 1-714 |
| Cow position: | chr22:12499210-12499923 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 424 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 1-716 |
| Cow position: | chr22:12431568-12430853 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 580, 604 |
| Conread position: | 1-727 |
| Cow position: | chr22:12498958-12499684 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 431 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 214, 206 |
| Conread position: | 1-743 |
| Cow position: | chr22:12399756-12399014 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 41 |
| Conread position: | 4-715 |
| Cow position: | chr22:12399837-12399126 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 408 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 142, 137 |
| Conread position: | 6-512 |
| Cow position: | chr22:12419018-12418512 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 106 |
| Conread position: | 13-530 |
| Cow position: | chr22:14429914-14430431 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 307 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 158, 189 |
| Conread position: | 13-725 |
| Cow position: | chr22:12432396-12431684 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 400 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 613, 603 |
| Conread position: | 13-727 |
| Cow position: | chr22:12499138-12499852 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 424 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 99, 104 |
| Conread position: | 13-740 |
| Cow position: | chr22:12476121-12475394 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 429 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 144, 139 |
| Conread position: | 13-743 |
| Cow position: | chr22:12431892-12431162 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 418 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 454, 446 |
| Conread position: | 19-652 |
| Cow position: | chr22:12399402-12398769 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 372 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 19-716 |
| Cow position: | chr22:11640628-11641325 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 91 |
| Conread position: | 19-722 |
| Cow position: | chr22:12458586-12457883 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 411 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 445, 430 |
| Conread position: | 19-725 |
| Cow position: | chr22:12476283-12475577 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 416 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 267, 262 |
| Conread position: | 50-670 |
| Cow position: | chr22:14442097-14442715 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 356 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 88 |
| Conread position: | 52-710 |
| Cow position: | chr22:12431769-12431111 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 389 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 405, 398 |
| Conread position: | 58-698 |
| Cow position: | chr22:12432435-12431795 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-623 |
| Cow position: | chr22:12475907-12475343 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 342 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 171, 164 |
| Conread position: | 61-708 |
| Cow position: | chr22:12498934-12499580 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 376 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 283, 289 |
| Conread position: | 61-713 |
| Cow position: | chr22:12399444-12398792 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 387 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 66-614 |
| Cow position: | chr22:14429883-14430431 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 75-530 |
| Cow position: | chr22:12458612-12458159 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 262, 12 |
| Conread position: | 82-531 |
| Cow position: | chr22:14429815-14430264 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 96, 121 |
| Conread position: | 83-459 |
| Cow position: | chr22:14467977-14468353 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 204, 194 |
| Conread position: | 90-690 |
| Cow position: | chr22:12419018-12418419 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 369, 382 |
| Conread position: | 115-725 |
| Cow position: | chr22:12385718-12385106 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 359 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 22, 18 |
| Conread position: | 136-740 |
| Cow position: | chr22:12476334-12475732 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 163, 159 |
| Conread position: | 136-740 |
| Cow position: | chr22:12498925-12499527 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 358 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 163, 159 |
| Conread position: | 175-687 |
| Cow position: | chr22:12458598-12458086 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 305 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 181-708 |
| Cow position: | chr22:11640622-11641148 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 211-623 |
| Cow position: | chr22:11666493-11666905 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 84 |
| Conread position: | 211-707 |
| Cow position: | chr22:11701147-11701643 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 94 |
| Conread position: | 218-735 |
| Cow position: | chr22:12418974-12418457 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 321 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 279, 283 |
| Conread position: | 262-690 |
| Cow position: | chr22:12458595-12458167 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 38, 34 |
| Conread position: | 265-707 |
| Cow position: | chr22:11666463-11666905 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 160, 96 |
| Conread position: | 265-726 |
| Cow position: | chr22:11701117-11701577 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 277, 267 |
| Conread position: | 302-751 |
| Cow position: | chr22:12432443-12431994 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 41, 48 |
| Conread position: | 346-712 |
| Cow position: | chr22:12458595-12458229 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 349-708 |
| Cow position: | chr22:12419011-12418653 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 351, 0 |
| Conread position: | 349-738 |
| Cow position: | chr22:12476373-12475983 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 97 |
Show alignments to all cow chromosomes.