Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8061D03.3 |
| Conread position: | 1-243 |
| Cow position: | chr23:25723955-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 1-337 |
| Cow position: | chr23:24546990-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 330, 0 |
| Conread position: | 1-338 |
| Cow position: | chr23:24560466-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 170, 201 |
| Conread position: | 1-347 |
| Cow position: | chr23:24639724-24640069 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 214, 195 |
| Conread position: | 1-377 |
| Cow position: | chr23:24522564-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 214, 209 |
| Conread position: | 1-422 |
| Cow position: | chr23:25626619-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 218, 209 |
| Conread position: | 1-425 |
| Cow position: | chr23:24639640-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-459 |
| Cow position: | chr23:24547158-24546700 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 111 |
| Conread position: | 1-461 |
| Cow position: | chr23:25698568-25698108 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 131, 143 |
| Conread position: | 1-482 |
| Cow position: | chr23:25660239-25660720 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 291 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 120, 114 |
| Conread position: | 1-670 |
| Cow position: | chr23:24560802-24560134 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 663, 0 |
| Conread position: | 3-689 |
| Cow position: | chr23:25626120-25626803 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 411 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 123, 109 |
| Conread position: | 4-338 |
| Cow position: | chr23:24626399-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 109 |
| Conread position: | 4-422 |
| Cow position: | chr23:24560547-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 305, 310 |
| Conread position: | 5-727 |
| Cow position: | chr23:24639308-24640030 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 431 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 13-459 |
| Cow position: | chr23:25660167-25660613 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 207, 196 |
| Conread position: | 13-461 |
| Cow position: | chr23:24535861-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 288 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 13-569 |
| Cow position: | chr23:24522717-24522164 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 370, 107 |
| Conread position: | 13-596 |
| Cow position: | chr23:24639484-24640067 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 13-652 |
| Cow position: | chr23:24639400-24640039 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 387 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 113, 102 |
| Conread position: | 19-566 |
| Cow position: | chr23:25698634-25698087 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 19-734 |
| Cow position: | chr23:24560868-24560153 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 246 |
| Conread position: | 19-743 |
| Cow position: | chr23:24639238-24639962 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 428 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 128, 122 |
| Conread position: | 40-619 |
| Cow position: | chr23:24547287-24546708 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-708 |
| Cow position: | chr23:24639199-24639842 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 386 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 73-484 |
| Cow position: | chr23:24522576-24522165 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 226, 221 |
| Conread position: | 82-506 |
| Cow position: | chr23:24626309-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 85-686 |
| Cow position: | chr23:25626454-25627055 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 357 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 110 |
| Conread position: | 97-727 |
| Cow position: | chr23:24560874-24560244 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 375 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 149, 169 |
| Conread position: | 102-624 |
| Cow position: | chr23:25660172-25660693 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 40 |
| Conread position: | 145-511 |
| Cow position: | chr23:25724063-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 150-713 |
| Cow position: | chr23:25660135-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 339 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 159-542 |
| Cow position: | chr23:24626302-24626685 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-729 |
| Cow position: | chr23:25626028-25626595 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 504, 517 |
| Conread position: | 166-740 |
| Cow position: | chr23:24639217-24639791 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 89, 99 |
| Conread position: | 190-482 |
| Cow position: | chr23:24654058-24654350 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-713 |
| Cow position: | chr23:24547268-24546782 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 117, 123 |
| Conread position: | 247-671 |
| Cow position: | chr23:24626306-24626731 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 264-710 |
| Cow position: | chr23:25660166-25660612 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 265-570 |
| Cow position: | chr23:24654049-24654355 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 286, 267 |
| Conread position: | 348-719 |
| Cow position: | chr23:25660166-25660537 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 196, 205 |
| Conread position: | 377-726 |
| Cow position: | chr23:25625990-25626339 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 261, 271 |
Show alignments to all cow chromosomes.