Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8061D03.3 |
| Conread position: | 1-342 |
| Cow position: | chr28:33210315-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 145, 141 |
| Conread position: | 1-586 |
| Cow position: | chr28:34695999-34696584 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 145 |
| Conread position: | 1-642 |
| Cow position: | chr28:7757671-7758312 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 391 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 132, 136 |
| Conread position: | 1-642 |
| Cow position: | chr28:34695915-34696556 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 1-681 |
| Cow position: | chr28:7758091-7758755 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 381 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 1-717 |
| Cow position: | chr28:7757419-7758135 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 1-726 |
| Cow position: | chr28:7757923-7758632 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 401 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 5-476 |
| Cow position: | chr28:7810355-7810817 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 10-734 |
| Cow position: | chr28:7757182-7757900 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 129 |
| Conread position: | 13-707 |
| Cow position: | chr28:7757515-7758209 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 102 |
| Conread position: | 19-411 |
| Cow position: | chr28:11333864-11333472 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 103, 96 |
| Conread position: | 19-479 |
| Cow position: | chr28:7757857-7758318 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 19-566 |
| Cow position: | chr28:9253040-9253587 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 112 |
| Conread position: | 20-726 |
| Cow position: | chr28:34695850-34696556 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 138 |
| Conread position: | 32-425 |
| Cow position: | chr28:33210262-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 114, 110 |
| Conread position: | 60-487 |
| Cow position: | chr28:11333907-11333479 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 61-425 |
| Cow position: | chr28:9290315-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 60 |
| Conread position: | 61-428 |
| Cow position: | chr28:7810570-7810937 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-469 |
| Cow position: | chr28:7758387-7758794 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 84 |
| Conread position: | 61-562 |
| Cow position: | chr28:9290151-9290647 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 176, 52 |
| Conread position: | 64-645 |
| Cow position: | chr28:11334071-11333490 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 196, 200 |
| Conread position: | 65-735 |
| Cow position: | chr28:11334154-11333484 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 396 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 130, 137 |
| Conread position: | 73-668 |
| Cow position: | chr28:9253010-9253607 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 68 |
| Conread position: | 82-509 |
| Cow position: | chr28:33210228-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 148 |
| Conread position: | 118-715 |
| Cow position: | chr28:9252971-9253568 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 112 |
| Conread position: | 189-740 |
| Cow position: | chr28:34695851-34696402 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 110, 102 |
| Conread position: | 265-715 |
| Cow position: | chr28:34695843-34696293 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 110 |
| Conread position: | 284-677 |
| Cow position: | chr28:33210262-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 164, 171 |
| Conread position: | 286-727 |
| Cow position: | chr28:9252971-9253412 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 379, 386 |
| Conread position: | 368-744 |
| Cow position: | chr28:33210262-33210639 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 176, 180 |
Show alignments to all cow chromosomes.