Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063D21.3 |
| Conread position: | 810-1010 |
| Cow position: | chr11:66188289-66188478 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 811-972 |
| Cow position: | chr11:27719292-27719446 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 115, 72 |
| Conread position: | 819-986 |
| Cow position: | chr11:33345464-33345307 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 819-1010 |
| Cow position: | chr11:10076787-10076608 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 150, 58 |
| Conread position: | 821-1036 |
| Cow position: | chr11:15772697-15772901 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 822-973 |
| Cow position: | chr11:18341025-18341165 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 822-986 |
| Cow position: | chr11:81168011-81168170 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 822-1004 |
| Cow position: | chr11:26144080-26144250 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 822-1006 |
| Cow position: | chr11:38874386-38874557 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 822-1006 |
| Cow position: | chr11:83397921-83397746 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 148, 58 |
| Conread position: | 822-1009 |
| Cow position: | chr11:30597009-30596830 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 822-1009 |
| Cow position: | chr11:61454500-61454688 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 822-1010 |
| Cow position: | chr11:377626-377803 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 822-1010 |
| Cow position: | chr11:9270708-9270885 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 68 |
| Conread position: | 822-1010 |
| Cow position: | chr11:23138039-23138219 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 822-1010 |
| Cow position: | chr11:38236267-38236086 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 148, 79 |
| Conread position: | 822-1010 |
| Cow position: | chr11:61958728-61958904 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 822-1010 |
| Cow position: | chr11:62979506-62979323 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 148, 58 |
| Conread position: | 822-1010 |
| Cow position: | chr11:70273322-70273143 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 822-1010 |
| Cow position: | chr11:70483836-70484016 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 822-1012 |
| Cow position: | chr11:30708522-30708339 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 152, 59 |
| Conread position: | 822-1014 |
| Cow position: | chr11:71868587-71868770 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 822-1031 |
| Cow position: | chr11:13500031-13499835 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 145, 26 |
| Conread position: | 822-1039 |
| Cow position: | chr11:27913300-27913089 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 822-1039 |
| Cow position: | chr11:32436350-32436147 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 148, 60 |
| Conread position: | 822-1039 |
| Cow position: | chr11:62155654-62155440 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 822-1044 |
| Cow position: | chr11:27932291-27932080 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 148, 100 |
| Conread position: | 823-992 |
| Cow position: | chr11:36658804-36658964 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 823-1029 |
| Cow position: | chr11:53130828-53130635 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 825-980 |
| Cow position: | chr11:29946901-29947063 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 825-1003 |
| Cow position: | chr11:75480007-75480179 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 56 |
| Conread position: | 825-1010 |
| Cow position: | chr11:2084156-2083979 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 145, 56 |
| Conread position: | 825-1010 |
| Cow position: | chr11:22931958-22932132 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 145, 57 |
| Conread position: | 825-1010 |
| Cow position: | chr11:27386326-27386503 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 145, 57 |
| Conread position: | 825-1010 |
| Cow position: | chr11:70086347-70086167 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 149, 56 |
| Conread position: | 826-1010 |
| Cow position: | chr11:30925168-30924992 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 826-1013 |
| Cow position: | chr11:56654567-56654388 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 144, 56 |
| Conread position: | 828-1010 |
| Cow position: | chr11:64638515-64638691 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 142, 53 |
| Conread position: | 829-1004 |
| Cow position: | chr11:48042026-48042191 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 141, 52 |
| Conread position: | 829-1010 |
| Cow position: | chr11:30120651-30120823 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 141, 53 |
| Conread position: | 831-1006 |
| Cow position: | chr11:68909839-68910004 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 833-1010 |
| Cow position: | chr11:15525972-15525796 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 137, 51 |
| Conread position: | 838-1009 |
| Cow position: | chr11:8105785-8105625 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 132, 44 |
| Conread position: | 838-1010 |
| Cow position: | chr11:12555406-12555576 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 132, 16 |
| Conread position: | 843-1038 |
| Cow position: | chr11:5211734-5211929 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 127, 53 |
| Conread position: | 896-1010 |
| Cow position: | chr11:68570713-68570831 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 904-1000 |
| Cow position: | chr11:54334278-54334184 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.