Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063D21.3 |
| Conread position: | 816-1010 |
| Cow position: | chr4:39128576-39128386 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 821-1004 |
| Cow position: | chr4:65950682-65950507 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 149, 60 |
| Conread position: | 821-1010 |
| Cow position: | chr4:23445019-23445200 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 149, 60 |
| Conread position: | 822-978 |
| Cow position: | chr4:34700004-34700158 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 148, 78 |
| Conread position: | 822-980 |
| Cow position: | chr4:65432176-65432026 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 145, 59 |
| Conread position: | 822-1002 |
| Cow position: | chr4:45589572-45589739 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 822-1004 |
| Cow position: | chr4:34369424-34369594 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 822-1006 |
| Cow position: | chr4:37313195-37313027 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 822-1010 |
| Cow position: | chr4:21371417-21371243 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 822-1010 |
| Cow position: | chr4:23509622-23509445 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 822-1010 |
| Cow position: | chr4:34630924-34630747 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 822-1010 |
| Cow position: | chr4:45775312-45775494 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 59 |
| Conread position: | 822-1010 |
| Cow position: | chr4:48322059-48321877 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 61, 105 |
| Conread position: | 822-1010 |
| Cow position: | chr4:52748428-52748605 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 822-1010 |
| Cow position: | chr4:60370800-60370976 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 822-1011 |
| Cow position: | chr4:20124942-20125138 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 128 |
| Conread position: | 822-1012 |
| Cow position: | chr4:31505998-31506181 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 822-1017 |
| Cow position: | chr4:44782400-44782219 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 145, 12 |
| Conread position: | 822-1029 |
| Cow position: | chr4:5460835-5461027 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 145, 59 |
| Conread position: | 825-980 |
| Cow position: | chr4:37343150-37342994 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 130 |
| Conread position: | 825-997 |
| Cow position: | chr4:13284407-13284244 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 120, 56 |
| Conread position: | 825-1010 |
| Cow position: | chr4:19322055-19322230 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 52 |
| Conread position: | 825-1016 |
| Cow position: | chr4:55395786-55395607 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 145, 56 |
| Conread position: | 825-1017 |
| Cow position: | chr4:12473874-12473690 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 120, 55 |
| Conread position: | 825-1035 |
| Cow position: | chr4:37732460-37732663 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 145, 56 |
| Conread position: | 825-1039 |
| Cow position: | chr4:36893382-36893183 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 826-1009 |
| Cow position: | chr4:59785344-59785171 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 144, 55 |
| Conread position: | 826-1043 |
| Cow position: | chr4:54767351-54767569 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 827-980 |
| Cow position: | chr4:14500223-14500375 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 143, 100 |
| Conread position: | 827-1006 |
| Cow position: | chr4:34165953-34166121 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 827-1039 |
| Cow position: | chr4:22138201-22138406 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 116, 54 |
| Conread position: | 829-999 |
| Cow position: | chr4:11897276-11897435 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 141, 52 |
| Conread position: | 830-1017 |
| Cow position: | chr4:34383323-34383501 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 140, 51 |
| Conread position: | 833-1011 |
| Cow position: | chr4:30929617-30929447 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 834-1009 |
| Cow position: | chr4:11901547-11901709 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 838-1010 |
| Cow position: | chr4:48137922-48137763 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 838-1010 |
| Cow position: | chr4:61214985-61215149 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 839-1006 |
| Cow position: | chr4:45483453-45483293 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 131, 42 |
| Conread position: | 841-1010 |
| Cow position: | chr4:43369839-43370001 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 841-1034 |
| Cow position: | chr4:46370832-46370644 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 129, 43 |
| Conread position: | 904-1009 |
| Cow position: | chr4:67392914-67392812 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 79 |
Show alignments to all cow chromosomes.