Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8065J01.3 |
| Conread position: | 2-584 |
| Cow position: | chr11:24394469-24393889 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 369 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 3-388 |
| Cow position: | chr11:72588507-72588140 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 6-582 |
| Cow position: | chr11:44252952-44252372 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 368 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 9-578 |
| Cow position: | chr11:72309891-72310455 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 369 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 9-669 |
| Cow position: | chr11:12357264-12357929 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 422 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 19-609 |
| Cow position: | chr11:59038649-59039217 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 394 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 303, 55 |
| Conread position: | 20-581 |
| Cow position: | chr11:4269266-4269826 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 370 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 265, 80 |
| Conread position: | 58-669 |
| Cow position: | chr11:53430945-53431571 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 394 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 76-669 |
| Cow position: | chr11:43513537-43514145 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 380 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 91, 54 |
| Conread position: | 87-672 |
| Cow position: | chr11:9762678-9763264 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 383 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 127-627 |
| Cow position: | chr11:49840897-49840386 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 333 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 75, 31 |
| Conread position: | 197-592 |
| Cow position: | chr11:75554020-75554414 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 201-504 |
| Cow position: | chr11:15943378-15943686 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 121, 20 |
| Conread position: | 201-592 |
| Cow position: | chr11:20575418-20575815 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 106, 25 |
| Conread position: | 201-608 |
| Cow position: | chr11:32633640-32634035 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 23 |
| Conread position: | 201-717 |
| Cow position: | chr11:74986875-74986368 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 168, 24 |
| Conread position: | 203-669 |
| Cow position: | chr11:31258758-31258292 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 121, 33 |
| Conread position: | 210-480 |
| Cow position: | chr11:35335363-35335633 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 161, 29 |
| Conread position: | 228-670 |
| Cow position: | chr11:54484473-54484926 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 230-517 |
| Cow position: | chr11:84256526-84256236 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 55, 18 |
| Conread position: | 232-716 |
| Cow position: | chr11:23126963-23127457 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 237-586 |
| Cow position: | chr11:36324330-36323982 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 85, 57 |
| Conread position: | 237-683 |
| Cow position: | chr11:7290632-7291071 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 258-669 |
| Cow position: | chr11:919863-920266 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 259, 36 |
| Conread position: | 263-507 |
| Cow position: | chr11:23479451-23479199 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 264-592 |
| Cow position: | chr11:38834526-38834870 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 264-682 |
| Cow position: | chr11:28053706-28054136 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 363-669 |
| Cow position: | chr11:73462487-73462794 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 152, 68 |
| Conread position: | 387-672 |
| Cow position: | chr11:15695769-15696059 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 129, 44 |
| Conread position: | 437-684 |
| Cow position: | chr11:84515558-84515812 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 25 |
Show alignments to all cow chromosomes.