Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8065J01.3 |
| Conread position: | 4-513 |
| Cow position: | chr3:82638459-82637973 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 343 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 7-586 |
| Cow position: | chr3:37952631-37953209 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 371 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 145, 66 |
| Conread position: | 7-592 |
| Cow position: | chr3:10095774-10095210 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 403 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 9-671 |
| Cow position: | chr3:45975869-45975203 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 426 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 134 |
| Conread position: | 20-604 |
| Cow position: | chr3:27980231-27979655 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 368 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 186, 57 |
| Conread position: | 20-669 |
| Cow position: | chr3:57483376-57484023 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 413 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 265, 80 |
| Conread position: | 189-580 |
| Cow position: | chr3:31574592-31574198 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 124, 15 |
| Conread position: | 189-590 |
| Cow position: | chr3:57537727-57537322 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 127, 15 |
| Conread position: | 189-609 |
| Cow position: | chr3:14660209-14660643 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 201-514 |
| Cow position: | chr3:71237580-71237889 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 154, 35 |
| Conread position: | 201-706 |
| Cow position: | chr3:58166269-58165749 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 120, 37 |
| Conread position: | 204-517 |
| Cow position: | chr3:27301391-27301721 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 83, 9 |
| Conread position: | 208-592 |
| Cow position: | chr3:79117327-79116957 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 303, 10 |
| Conread position: | 208-732 |
| Cow position: | chr3:75064234-75064751 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 352 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 77, 19 |
| Conread position: | 217-714 |
| Cow position: | chr3:15806687-15806192 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 201, 22 |
| Conread position: | 219-708 |
| Cow position: | chr3:37841595-37842089 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 220-493 |
| Cow position: | chr3:71211262-71211542 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 108, 67 |
| Conread position: | 221-670 |
| Cow position: | chr3:33697487-33697930 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 236-609 |
| Cow position: | chr3:79431557-79431941 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 237-592 |
| Cow position: | chr3:46816543-46816906 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 5, 45 |
| Conread position: | 237-668 |
| Cow position: | chr3:67779250-67778811 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 267-669 |
| Cow position: | chr3:22853376-22853786 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 289-656 |
| Cow position: | chr3:11541838-11541454 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 33, 161 |
| Conread position: | 304-732 |
| Cow position: | chr3:3564053-3563640 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 305-709 |
| Cow position: | chr3:28300785-28300374 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 80, 66 |
| Conread position: | 321-713 |
| Cow position: | chr3:39661786-39662174 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 45, 118 |
| Conread position: | 322-669 |
| Cow position: | chr3:15720776-15720426 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 195, 60 |
| Conread position: | 330-668 |
| Cow position: | chr3:43429567-43429925 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 112 |
| Conread position: | 383-694 |
| Cow position: | chr3:81005471-81005150 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 383-694 |
| Cow position: | chr3:81592698-81593019 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 391-654 |
| Cow position: | chr3:7313974-7314237 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 17, 38 |
Show alignments to all cow chromosomes.