Cow genome map


           Conread name:
           Ss1.1-Spl1-SPL010001G10.5
        

               Conread position:
               1235-1615
               

               Cow position:
               chr5:2305608-2306009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               264
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               93, 77
               

               Conread position:
               1235-1640
               

               Cow position:
               chr5:32982638-32983047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               181, 77
               

               Conread position:
               1244-1592
               

               Cow position:
               chr5:69290603-69290259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               20, 32
               

               Conread position:
               1244-1639
               

               Cow position:
               chr5:24343376-24343774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               20, 101
               

               Conread position:
               1245-1649
               

               Cow position:
               chr5:21665639-21665229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               276
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               11, 142
               

               Conread position:
               1269-1593
               

               Cow position:
               chr5:72182835-72182509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               27, 120
               

               Conread position:
               1273-1649
               

               Cow position:
               chr5:19599644-19600011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               248
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               16, 40
               

               Conread position:
               1295-1648
               

               Cow position:
               chr5:29119771-29120129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               121, 71
               

               Conread position:
               1339-1649
               

               Cow position:
               chr5:53920496-53920181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               78, 48
               

               Conread position:
               1476-1640
               

               Cow position:
               chr5:46487812-46487648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               24, 65
               
Show alignments to all cow chromosomes.