Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01F070075.5 |
| Conread position: | 90-925 |
| Cow position: | chr5:27061500-27062368 (view UCSC Genome Browser custom track) |
| Alignm length: | 888 |
| Alignm identity: | 606 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 114-343 |
| Cow position: | chr5:49594367-49594607 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 165-747 |
| Cow position: | chr5:28044911-28045523 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 188 |
| Conread position: | 237-934 |
| Cow position: | chr5:13424770-13424043 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 241-600 |
| Cow position: | chr5:61565341-61564969 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 241-936 |
| Cow position: | chr5:51951237-51950529 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 92 |
| Conread position: | 242-936 |
| Cow position: | chr5:29438650-29439361 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 248-918 |
| Cow position: | chr5:39247859-39248545 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 259-936 |
| Cow position: | chr5:50159328-50158636 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 359-628 |
| Cow position: | chr5:7503686-7503960 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 51, 72 |
| Conread position: | 364-675 |
| Cow position: | chr5:27683961-27684288 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 73 |
| Conread position: | 364-928 |
| Cow position: | chr5:57976362-57975781 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 373 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 117 |
| Conread position: | 391-928 |
| Cow position: | chr5:75145693-75145124 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 165 |
| Conread position: | 409-832 |
| Cow position: | chr5:3820534-3820094 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 415-764 |
| Cow position: | chr5:63823828-63824190 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 87, 46 |
| Conread position: | 415-928 |
| Cow position: | chr5:57907182-57906675 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 327 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 495-935 |
| Cow position: | chr5:27486789-27486340 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 303 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 496-936 |
| Cow position: | chr5:47775021-47774563 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 331 |
| Conread position: | 503-918 |
| Cow position: | chr5:27338119-27337695 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 508-916 |
| Cow position: | chr5:12682757-12683160 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 147, 31 |
| Conread position: | 508-926 |
| Cow position: | chr5:49594747-49595185 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 28, 201 |
| Conread position: | 635-936 |
| Cow position: | chr5:61274889-61275196 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 92 |
| Conread position: | 675-928 |
| Cow position: | chr5:42749870-42749615 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 677-936 |
| Cow position: | chr5:31597678-31597415 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 27 |
Show alignments to all cow chromosomes.