Cow genome map


           Conread name:
           Ss1.1-Tes1-TES01A020049.5
        

               Conread position:
               11-1097
               

               Cow position:
               chr4:6253703-6254760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1089
               

               Alignm identity:
               872
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               858, 389
               

               Conread position:
               1305-1504
               

               Cow position:
               chr4:63198346-63198149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               10, 79
               

               Conread position:
               1306-1498
               

               Cow position:
               chr4:51769131-51769319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               167, 72
               

               Conread position:
               1319-1479
               

               Cow position:
               chr4:62794323-62794162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               83, 61
               

               Conread position:
               1319-1482
               

               Cow position:
               chr4:46435365-46435531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1319-1493
               

               Cow position:
               chr4:59002099-59001932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               126, 61
               

               Conread position:
               1319-1503
               

               Cow position:
               chr4:69290702-69290523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               124, 62
               

               Conread position:
               1319-1513
               

               Cow position:
               chr4:37991630-37991812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               126, 84
               

               Conread position:
               1320-1482
               

               Cow position:
               chr4:19700137-19700304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               93, 60
               

               Conread position:
               1320-1495
               

               Cow position:
               chr4:28660509-28660336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               125, 78
               
Show alignments to all cow chromosomes.