Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 41-864 |
| Cow position: | chr13:39984070-39984893 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 435, 442 |
| Conread position: | 41-895 |
| Cow position: | chr13:39983986-39984840 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 435, 442 |
| Conread position: | 93-698 |
| Cow position: | chr13:39984290-39984895 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 105-1039 |
| Cow position: | chr13:39983882-39984816 (view UCSC Genome Browser custom track) |
| Alignm length: | 937 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 376 |
| Conread position: | 114-1038 |
| Cow position: | chr13:39983978-39984899 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 698, 28 |
| Conread position: | 132-681 |
| Cow position: | chr13:56333725-56334283 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 211, 197 |
| Conread position: | 137-498 |
| Cow position: | chr13:56292181-56291822 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 137-950 |
| Cow position: | chr13:22125111-22125924 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 687, 711 |
| Conread position: | 137-1040 |
| Cow position: | chr13:22124943-22125846 (view UCSC Genome Browser custom track) |
| Alignm length: | 908 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 148 |
| Conread position: | 137-1040 |
| Cow position: | chr13:24162669-24163572 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 148 |
| Conread position: | 137-1050 |
| Cow position: | chr13:22124691-22125603 (view UCSC Genome Browser custom track) |
| Alignm length: | 919 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 120 |
| Conread position: | 137-1099 |
| Cow position: | chr13:24162417-24163380 (view UCSC Genome Browser custom track) |
| Alignm length: | 969 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 123 |
| Conread position: | 144-950 |
| Cow position: | chr13:24162844-24163650 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 680, 704 |
| Conread position: | 146-737 |
| Cow position: | chr13:39930587-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 552, 0 |
| Conread position: | 146-1006 |
| Cow position: | chr13:22124784-22125644 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 146-1013 |
| Cow position: | chr13:24162762-24163630 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 175 |
| Conread position: | 146-1033 |
| Cow position: | chr13:22124868-22125755 (view UCSC Genome Browser custom track) |
| Alignm length: | 893 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 191 |
| Conread position: | 146-1034 |
| Cow position: | chr13:22125036-22125924 (view UCSC Genome Browser custom track) |
| Alignm length: | 893 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 176-1033 |
| Cow position: | chr13:24162624-24163481 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 161 |
| Conread position: | 188-798 |
| Cow position: | chr13:56292380-56291774 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 179 |
| Conread position: | 217-821 |
| Cow position: | chr13:39930574-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 217-1050 |
| Cow position: | chr13:22124687-22125519 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 123 |
| Conread position: | 217-1050 |
| Cow position: | chr13:24162413-24163245 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 123 |
| Conread position: | 281-832 |
| Cow position: | chr13:56333706-56334266 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 346 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 146, 134 |
| Conread position: | 304-1038 |
| Cow position: | chr13:56292684-56291955 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 443 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 102, 173 |
| Conread position: | 304-1046 |
| Cow position: | chr13:22124690-22125431 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 401 |
| Conread position: | 304-1046 |
| Cow position: | chr13:24162416-24163157 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 401 |
| Conread position: | 311-888 |
| Cow position: | chr13:39930584-39931159 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 435 |
| Conread position: | 312-1032 |
| Cow position: | chr13:56292508-56291792 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 441 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 314-864 |
| Cow position: | chr13:56292332-56291792 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 477, 132 |
| Conread position: | 354-1039 |
| Cow position: | chr13:56292718-56292038 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 407 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 152, 205 |
| Conread position: | 365-1028 |
| Cow position: | chr13:56333622-56334294 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 398 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 445, 0 |
| Conread position: | 385-989 |
| Cow position: | chr13:39930574-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 449-831 |
| Cow position: | chr13:56317339-56317711 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 469-1039 |
| Cow position: | chr13:39930574-39931144 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 277 |
| Conread position: | 515-917 |
| Cow position: | chr13:56333604-56334006 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 258 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 334, 322 |
| Conread position: | 533-921 |
| Cow position: | chr13:56317339-56317717 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 235, 18 |
| Conread position: | 585-832 |
| Cow position: | chr13:56317910-56318157 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 89 |
| Conread position: | 602-863 |
| Cow position: | chr13:56292722-56292461 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 145, 209 |
| Conread position: | 602-999 |
| Cow position: | chr13:56333523-56333920 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.