Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 1-999 |
| Cow position: | chr17:22590305-22589307 (view UCSC Genome Browser custom track) |
| Alignm length: | 1006 |
| Alignm identity: | 616 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 28-569 |
| Cow position: | chr17:22473412-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 141, 10 |
| Conread position: | 39-820 |
| Cow position: | chr17:22552262-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 218 |
| Conread position: | 41-804 |
| Cow position: | chr17:22499306-22498543 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 56-896 |
| Cow position: | chr17:22499375-22498535 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 278 |
| Conread position: | 74-1000 |
| Cow position: | chr17:22590148-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 103-743 |
| Cow position: | chr17:22452314-22451674 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 103-822 |
| Cow position: | chr17:22452398-22451679 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 133 |
| Conread position: | 103-894 |
| Cow position: | chr17:22552281-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 563 |
| Conread position: | 103-1032 |
| Cow position: | chr17:22552953-22552024 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-1038 |
| Cow position: | chr17:22553121-22552186 (view UCSC Genome Browser custom track) |
| Alignm length: | 938 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 480, 495 |
| Conread position: | 103-1059 |
| Cow position: | chr17:22552533-22551578 (view UCSC Genome Browser custom track) |
| Alignm length: | 961 |
| Alignm identity: | 625 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 161 |
| Conread position: | 104-774 |
| Cow position: | chr17:22452229-22451561 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 219 |
| Conread position: | 119-884 |
| Cow position: | chr17:41440956-41440191 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 151 |
| Conread position: | 132-992 |
| Cow position: | chr17:22452538-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 137-552 |
| Cow position: | chr17:41440602-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 397 |
| Conread position: | 137-667 |
| Cow position: | chr17:22473435-22473966 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 129 |
| Conread position: | 137-803 |
| Cow position: | chr17:22473267-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 137-971 |
| Cow position: | chr17:44467539-44468375 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 286 |
| Conread position: | 137-1039 |
| Cow position: | chr17:22553003-22552101 (view UCSC Genome Browser custom track) |
| Alignm length: | 904 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 876, 889 |
| Conread position: | 141-972 |
| Cow position: | chr17:22552327-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 693, 708 |
| Conread position: | 141-972 |
| Cow position: | chr17:22552747-22551916 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 146-737 |
| Cow position: | chr17:22473360-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 105 |
| Conread position: | 146-972 |
| Cow position: | chr17:22499369-22498543 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 426 |
| Conread position: | 146-972 |
| Cow position: | chr17:41441013-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 337 |
| Conread position: | 146-1000 |
| Cow position: | chr17:22552406-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 460 |
| Conread position: | 146-1000 |
| Cow position: | chr17:44467466-44468320 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-1034 |
| Cow position: | chr17:22552658-22551770 (view UCSC Genome Browser custom track) |
| Alignm length: | 890 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 688, 703 |
| Conread position: | 146-1039 |
| Cow position: | chr17:22552574-22551681 (view UCSC Genome Browser custom track) |
| Alignm length: | 896 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 146-1039 |
| Cow position: | chr17:41441097-41440204 (view UCSC Genome Browser custom track) |
| Alignm length: | 894 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-912 |
| Cow position: | chr17:22452411-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 179-999 |
| Cow position: | chr17:22590295-22589475 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 141 |
| Conread position: | 206-1000 |
| Cow position: | chr17:44467357-44468152 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 216 |
| Conread position: | 206-1039 |
| Cow position: | chr17:22499393-22498560 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 628, 636 |
| Conread position: | 206-1057 |
| Cow position: | chr17:44467442-44468292 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 126 |
| Conread position: | 209-1011 |
| Cow position: | chr17:41441118-41440316 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 207 |
| Conread position: | 258-1039 |
| Cow position: | chr17:22553134-22552353 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 591, 587 |
| Conread position: | 285-999 |
| Cow position: | chr17:22499398-22498684 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 643, 628 |
| Conread position: | 305-916 |
| Cow position: | chr17:22473351-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 282 |
| Conread position: | 342-1005 |
| Cow position: | chr17:22452411-22451748 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 365-1039 |
| Cow position: | chr17:44467433-44468107 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 385 |
| Conread position: | 369-1000 |
| Cow position: | chr17:22499398-22498767 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 497, 507 |
| Conread position: | 428-1039 |
| Cow position: | chr17:22473306-22473917 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 585, 598 |
| Conread position: | 454-1038 |
| Cow position: | chr17:22499395-22498813 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 461-1039 |
| Cow position: | chr17:41441118-41440540 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 255 |
| Conread position: | 511-1038 |
| Cow position: | chr17:22452410-22451883 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 144 |
| Conread position: | 530-995 |
| Cow position: | chr17:22473243-22473705 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 532-1000 |
| Cow position: | chr17:22473164-22473626 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 537-1032 |
| Cow position: | chr17:22499398-22498903 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 564-1039 |
| Cow position: | chr17:22473112-22473581 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 36 |
| Conread position: | 594-1032 |
| Cow position: | chr17:22452411-22451973 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 158, 146 |
| Conread position: | 638-1000 |
| Cow position: | chr17:22553174-22552812 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 688-1039 |
| Cow position: | chr17:22452401-22452050 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 325, 334 |
| Conread position: | 713-1050 |
| Cow position: | chr17:41441118-41440782 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 327, 0 |
| Conread position: | 729-1034 |
| Cow position: | chr17:22553167-22552862 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 154, 159 |
| Conread position: | 731-1011 |
| Cow position: | chr17:44467379-44467659 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.