Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 2-621 |
| Cow position: | chr19:43570254-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 383 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 180, 26 |
| Conread position: | 2-649 |
| Cow position: | chr19:23614491-23615136 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 2-879 |
| Cow position: | chr19:23614239-23615116 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 2-999 |
| Cow position: | chr19:23613399-23614396 (view UCSC Genome Browser custom track) |
| Alignm length: | 1002 |
| Alignm identity: | 622 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 2-1039 |
| Cow position: | chr19:14940039-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 1041 |
| Alignm identity: | 658 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 2-1039 |
| Cow position: | chr19:23613483-23614520 (view UCSC Genome Browser custom track) |
| Alignm length: | 1043 |
| Alignm identity: | 654 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 8-1000 |
| Cow position: | chr19:20677420-20678412 (view UCSC Genome Browser custom track) |
| Alignm length: | 1013 |
| Alignm identity: | 627 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 38-1032 |
| Cow position: | chr19:23614106-23615101 (view UCSC Genome Browser custom track) |
| Alignm length: | 998 |
| Alignm identity: | 621 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 715 |
| Conread position: | 41-1034 |
| Cow position: | chr19:23613858-23614851 (view UCSC Genome Browser custom track) |
| Alignm length: | 999 |
| Alignm identity: | 624 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 81 |
| Conread position: | 41-1038 |
| Cow position: | chr19:14960301-14959322 (view UCSC Genome Browser custom track) |
| Alignm length: | 1002 |
| Alignm identity: | 621 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 93 |
| Conread position: | 52-414 |
| Cow position: | chr19:14948367-14948004 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 225 |
| Conread position: | 57-1038 |
| Cow position: | chr19:23613790-23614771 (view UCSC Genome Browser custom track) |
| Alignm length: | 988 |
| Alignm identity: | 634 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 191 |
| Conread position: | 58-1000 |
| Cow position: | chr19:23613707-23614649 (view UCSC Genome Browser custom track) |
| Alignm length: | 947 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 128 |
| Conread position: | 61-1039 |
| Cow position: | chr19:14939930-14940908 (view UCSC Genome Browser custom track) |
| Alignm length: | 980 |
| Alignm identity: | 621 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 195 |
| Conread position: | 63-713 |
| Cow position: | chr19:23614466-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 186 |
| Conread position: | 64-734 |
| Cow position: | chr19:20635688-20635018 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 97-1039 |
| Cow position: | chr19:23614082-23615024 (view UCSC Genome Browser custom track) |
| Alignm length: | 948 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 153 |
| Conread position: | 98-1039 |
| Cow position: | chr19:14960412-14959489 (view UCSC Genome Browser custom track) |
| Alignm length: | 951 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 259 |
| Conread position: | 103-380 |
| Cow position: | chr19:14959096-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 242, 227 |
| Conread position: | 103-717 |
| Cow position: | chr19:23597097-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-792 |
| Cow position: | chr19:23649790-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 308 |
| Conread position: | 104-498 |
| Cow position: | chr19:14948398-14948004 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 104-800 |
| Cow position: | chr19:14959500-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 195 |
| Conread position: | 104-871 |
| Cow position: | chr19:23649707-23650476 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 313 |
| Conread position: | 104-1000 |
| Cow position: | chr19:23613669-23614565 (view UCSC Genome Browser custom track) |
| Alignm length: | 898 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 105-590 |
| Cow position: | chr19:14948480-14947996 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 304 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 395, 77 |
| Conread position: | 109-871 |
| Cow position: | chr19:43570392-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 114 |
| Conread position: | 119-919 |
| Cow position: | chr19:14959654-14958868 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 50 |
| Conread position: | 120-631 |
| Cow position: | chr19:23649974-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 132-1038 |
| Cow position: | chr19:23649399-23650305 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 621 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 710, 716 |
| Conread position: | 132-1039 |
| Cow position: | chr19:23649567-23650474 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 623 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 279 |
| Conread position: | 137-663 |
| Cow position: | chr19:20635531-20635005 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 110 |
| Conread position: | 137-906 |
| Cow position: | chr19:23596966-23597733 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 138-960 |
| Cow position: | chr19:23649655-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 635 |
| Conread position: | 144-971 |
| Cow position: | chr19:23596889-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 517, 146 |
| Conread position: | 146-804 |
| Cow position: | chr19:20678146-20678801 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 146-832 |
| Cow position: | chr19:14959542-14958871 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 185 |
| Conread position: | 146-999 |
| Cow position: | chr19:20677810-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 364 |
| Conread position: | 146-1000 |
| Cow position: | chr19:20677726-20678580 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 146-1000 |
| Cow position: | chr19:23613375-23614229 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 146-1039 |
| Cow position: | chr19:20677642-20678535 (view UCSC Genome Browser custom track) |
| Alignm length: | 894 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-1039 |
| Cow position: | chr19:23649329-23650222 (view UCSC Genome Browser custom track) |
| Alignm length: | 896 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 363 |
| Conread position: | 146-1039 |
| Cow position: | chr19:23649497-23650390 (view UCSC Genome Browser custom track) |
| Alignm length: | 897 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 108 |
| Conread position: | 146-1056 |
| Cow position: | chr19:14940099-14941008 (view UCSC Genome Browser custom track) |
| Alignm length: | 913 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 171-1039 |
| Cow position: | chr19:23596832-23597697 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 176-1000 |
| Cow position: | chr19:14959678-14958871 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 27 |
| Conread position: | 195-832 |
| Cow position: | chr19:14960399-14959766 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 471, 240 |
| Conread position: | 196-816 |
| Cow position: | chr19:20635640-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 197-662 |
| Cow position: | chr19:14948470-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 12 |
| Conread position: | 204-999 |
| Cow position: | chr19:23613349-23614144 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 205-1039 |
| Cow position: | chr19:23649304-23650138 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 130 |
| Conread position: | 227-1039 |
| Cow position: | chr19:14959711-14958916 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 269-1048 |
| Cow position: | chr19:23649284-23650061 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 767, 0 |
| Conread position: | 305-918 |
| Cow position: | chr19:14960373-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 435, 220 |
| Conread position: | 305-1039 |
| Cow position: | chr19:43570364-43569644 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 310-756 |
| Cow position: | chr19:14948443-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 329-1038 |
| Cow position: | chr19:23596822-23597528 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 584, 210 |
| Conread position: | 343-918 |
| Cow position: | chr19:20635577-20635002 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 343-1000 |
| Cow position: | chr19:20677419-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 137 |
| Conread position: | 344-1038 |
| Cow position: | chr19:23613405-23614099 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 160 |
| Conread position: | 353-830 |
| Cow position: | chr19:14948484-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 365-971 |
| Cow position: | chr19:20635639-20635033 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 400-1038 |
| Cow position: | chr19:20635688-20635050 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 422-1039 |
| Cow position: | chr19:23596831-23597445 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 591, 201 |
| Conread position: | 437-1032 |
| Cow position: | chr19:14960409-14959816 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 256 |
| Conread position: | 448-922 |
| Cow position: | chr19:14948471-14948000 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 22 |
| Conread position: | 452-1000 |
| Cow position: | chr19:20677360-20677908 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 334 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 140, 124 |
| Conread position: | 457-1038 |
| Cow position: | chr19:23613350-23613931 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 198 |
| Conread position: | 529-975 |
| Cow position: | chr19:14915952-14916395 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 530-1010 |
| Cow position: | chr19:14948475-14947996 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 552-1038 |
| Cow position: | chr19:43570452-43569977 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 308 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 561-1011 |
| Cow position: | chr19:14960453-14960005 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 0 |
| Conread position: | 605-1038 |
| Cow position: | chr19:14948484-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 84 |
| Conread position: | 623-1039 |
| Cow position: | chr19:14960475-14960061 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 315, 0 |
| Conread position: | 683-1039 |
| Cow position: | chr19:23649278-23649634 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 689-1039 |
| Cow position: | chr19:14948484-14948135 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 24, 32 |
Show alignments to all cow chromosomes.