Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 57-455 |
| Cow position: | chr2:82800050-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 67-736 |
| Cow position: | chr2:78755697-78756365 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 409 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 74-999 |
| Cow position: | chr2:78755372-78756295 (view UCSC Genome Browser custom track) |
| Alignm length: | 934 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 96 |
| Conread position: | 103-871 |
| Cow position: | chr2:82799676-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 103-999 |
| Cow position: | chr2:78754244-78755122 (view UCSC Genome Browser custom track) |
| Alignm length: | 899 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 72 |
| Conread position: | 103-1000 |
| Cow position: | chr2:78755066-78755959 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 104-464 |
| Cow position: | chr2:48689391-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 118-1000 |
| Cow position: | chr2:86465095-86465977 (view UCSC Genome Browser custom track) |
| Alignm length: | 892 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 170 |
| Conread position: | 118-1002 |
| Cow position: | chr2:78754174-78755041 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 268 |
| Conread position: | 125-999 |
| Cow position: | chr2:78754920-78755790 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 214 |
| Conread position: | 132-623 |
| Cow position: | chr2:82799957-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 132-971 |
| Cow position: | chr2:86465361-86466200 (view UCSC Genome Browser custom track) |
| Alignm length: | 846 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 44 |
| Conread position: | 137-501 |
| Cow position: | chr2:86465870-86466232 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 92 |
| Conread position: | 137-841 |
| Cow position: | chr2:5874830-5874125 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 137-978 |
| Cow position: | chr2:78755518-78756355 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 171 |
| Conread position: | 137-1011 |
| Cow position: | chr2:82799542-82800416 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 376 |
| Conread position: | 137-1038 |
| Cow position: | chr2:82799458-82800359 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 199 |
| Conread position: | 141-992 |
| Cow position: | chr2:5875162-5874313 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 368 |
| Conread position: | 141-1011 |
| Cow position: | chr2:86465286-86466156 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 477, 467 |
| Conread position: | 144-999 |
| Cow position: | chr2:86465037-86465892 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 101 |
| Conread position: | 145-630 |
| Cow position: | chr2:48689517-48689033 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 306 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 145-1039 |
| Cow position: | chr2:78754370-78755246 (view UCSC Genome Browser custom track) |
| Alignm length: | 898 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 78 |
| Conread position: | 146-425 |
| Cow position: | chr2:86465963-86466240 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 146-707 |
| Cow position: | chr2:82799887-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-775 |
| Cow position: | chr2:5874737-5874108 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 146-839 |
| Cow position: | chr2:86465543-86466234 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 550, 546 |
| Conread position: | 146-888 |
| Cow position: | chr2:5874905-5874163 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 200 |
| Conread position: | 146-990 |
| Cow position: | chr2:5875073-5874229 (view UCSC Genome Browser custom track) |
| Alignm length: | 851 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 176 |
| Conread position: | 146-1039 |
| Cow position: | chr2:78754857-78755746 (view UCSC Genome Browser custom track) |
| Alignm length: | 901 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 150-820 |
| Cow position: | chr2:78755697-78756365 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 403 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 109, 99 |
| Conread position: | 196-1039 |
| Cow position: | chr2:78754823-78755664 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 243 |
| Conread position: | 203-716 |
| Cow position: | chr2:48689544-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 55 |
| Conread position: | 205-1015 |
| Cow position: | chr2:86465266-86466076 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 217 |
| Conread position: | 217-1047 |
| Cow position: | chr2:5875172-5874341 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 107 |
| Conread position: | 230-1039 |
| Cow position: | chr2:82799467-82800276 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 281 |
| Conread position: | 271-800 |
| Cow position: | chr2:48689559-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 319 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 280-1013 |
| Cow position: | chr2:86465005-86465738 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 292 |
| Conread position: | 281-1039 |
| Cow position: | chr2:78754824-78755580 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 129 |
| Conread position: | 305-1039 |
| Cow position: | chr2:82799458-82800192 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 708, 721 |
| Conread position: | 306-885 |
| Cow position: | chr2:78754114-78754688 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 373-884 |
| Cow position: | chr2:48689541-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 328 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 313, 127 |
| Conread position: | 428-1039 |
| Cow position: | chr2:86464985-86465596 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 365 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 264, 268 |
| Conread position: | 533-1038 |
| Cow position: | chr2:86465006-86465511 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 541-1005 |
| Cow position: | chr2:48689541-48689079 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 126 |
| Conread position: | 543-1009 |
| Cow position: | chr2:5875180-5874713 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 298 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 236, 214 |
| Conread position: | 636-1056 |
| Cow position: | chr2:82799453-82799872 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 0 |
| Conread position: | 687-999 |
| Cow position: | chr2:86464908-86465220 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 710-1011 |
| Cow position: | chr2:48689540-48689240 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 713-1039 |
| Cow position: | chr2:5875178-5874852 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 111, 126 |
| Conread position: | 795-1050 |
| Cow position: | chr2:5875180-5874926 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 50 |
Show alignments to all cow chromosomes.