Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 2-398 |
| Cow position: | chr23:24639685-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 3-463 |
| Cow position: | chr23:24547112-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 295 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 7-368 |
| Cow position: | chr23:25626669-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 28-459 |
| Cow position: | chr23:24654024-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 418, 379 |
| Conread position: | 34-999 |
| Cow position: | chr23:25626023-25626989 (view UCSC Genome Browser custom track) |
| Alignm length: | 974 |
| Alignm identity: | 626 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 226 |
| Conread position: | 39-1051 |
| Cow position: | chr23:25625947-25626957 (view UCSC Genome Browser custom track) |
| Alignm length: | 1018 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 101 |
| Conread position: | 46-900 |
| Cow position: | chr23:24639223-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 287 |
| Conread position: | 48-612 |
| Cow position: | chr23:24560629-24560063 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 480 |
| Conread position: | 58-914 |
| Cow position: | chr23:24522547-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 59-632 |
| Cow position: | chr23:25660173-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-379 |
| Cow position: | chr23:24535765-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 193 |
| Conread position: | 69-714 |
| Cow position: | chr23:25626398-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 88-882 |
| Cow position: | chr23:25626249-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 168 |
| Conread position: | 103-703 |
| Cow position: | chr23:25698674-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 103-726 |
| Cow position: | chr23:24547264-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 104-631 |
| Cow position: | chr23:24560655-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-498 |
| Cow position: | chr23:25724143-25723750 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 47 |
| Conread position: | 105-547 |
| Cow position: | chr23:24535893-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-831 |
| Cow position: | chr23:24522747-24522011 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 137 |
| Conread position: | 118-714 |
| Cow position: | chr23:25724046-25723454 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 332 |
| Conread position: | 124-631 |
| Cow position: | chr23:25626536-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 124-754 |
| Cow position: | chr23:24536042-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 132 |
| Conread position: | 132-986 |
| Cow position: | chr23:24639227-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 137-469 |
| Cow position: | chr23:24654049-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 186, 190 |
| Conread position: | 137-565 |
| Cow position: | chr23:24626324-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 200 |
| Conread position: | 137-882 |
| Cow position: | chr23:24560874-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 200 |
| Conread position: | 137-998 |
| Cow position: | chr23:24522552-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 122 |
| Conread position: | 146-663 |
| Cow position: | chr23:24535936-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 146-707 |
| Cow position: | chr23:25660176-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 210 |
| Conread position: | 173-649 |
| Cow position: | chr23:24626276-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 185-787 |
| Cow position: | chr23:24547266-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 71 |
| Conread position: | 189-552 |
| Cow position: | chr23:24654017-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 189-789 |
| Cow position: | chr23:25660134-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 192-1041 |
| Cow position: | chr23:24522828-24521969 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 41 |
| Conread position: | 204-966 |
| Cow position: | chr23:24560891-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 206-1011 |
| Cow position: | chr23:24639217-24640022 (view UCSC Genome Browser custom track) |
| Alignm length: | 809 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 216-619 |
| Cow position: | chr23:25724116-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 216-799 |
| Cow position: | chr23:24536034-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 219-787 |
| Cow position: | chr23:25698642-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 118 |
| Conread position: | 227-833 |
| Cow position: | chr23:24547308-24546702 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 280-832 |
| Cow position: | chr23:25660142-25660694 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 285-732 |
| Cow position: | chr23:24626304-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 0 |
| Conread position: | 305-711 |
| Cow position: | chr23:24654049-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 266 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 351, 385 |
| Conread position: | 305-873 |
| Cow position: | chr23:25698640-25698072 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 305-923 |
| Cow position: | chr23:24536029-24535410 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 580, 0 |
| Conread position: | 305-1039 |
| Cow position: | chr23:24560874-24560140 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 531, 539 |
| Conread position: | 309-725 |
| Cow position: | chr23:25724107-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 0 |
| Conread position: | 310-954 |
| Cow position: | chr23:24547309-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-967 |
| Cow position: | chr23:24536106-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 22 |
| Conread position: | 333-809 |
| Cow position: | chr23:24626268-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 364-1050 |
| Cow position: | chr23:24560897-24560214 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 638, 22 |
| Conread position: | 367-957 |
| Cow position: | chr23:25660145-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-753 |
| Cow position: | chr23:24654042-24654415 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 395-787 |
| Cow position: | chr23:25724105-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 395-1039 |
| Cow position: | chr23:24547308-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 437-1032 |
| Cow position: | chr23:25698676-25698081 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 448-1038 |
| Cow position: | chr23:24536054-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 451-864 |
| Cow position: | chr23:24626302-24626715 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 451-1005 |
| Cow position: | chr23:25660145-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 455-831 |
| Cow position: | chr23:25724129-25723753 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 457-1038 |
| Cow position: | chr23:24547330-24546749 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 466-805 |
| Cow position: | chr23:24654042-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 467-1039 |
| Cow position: | chr23:24639226-24639798 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 163 |
| Conread position: | 521-1050 |
| Cow position: | chr23:24560910-24560382 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 492, 501 |
| Conread position: | 535-977 |
| Cow position: | chr23:24626302-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 542-1038 |
| Cow position: | chr23:24639217-24639713 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 175 |
| Conread position: | 550-921 |
| Cow position: | chr23:24654042-24654415 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 0 |
| Conread position: | 555-1050 |
| Cow position: | chr23:24536031-24535537 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 285 |
| Conread position: | 557-954 |
| Cow position: | chr23:25724111-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 566-1000 |
| Cow position: | chr23:24626177-24626599 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 287 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 138, 63 |
| Conread position: | 593-1039 |
| Cow position: | chr23:24626276-24626722 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 284 |
| Conread position: | 604-1039 |
| Cow position: | chr23:25698677-25698242 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 369 |
| Conread position: | 619-1039 |
| Cow position: | chr23:24536051-24535631 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 265 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 148, 155 |
| Conread position: | 619-1039 |
| Cow position: | chr23:25660145-25660565 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 625-1039 |
| Cow position: | chr23:24547330-24546916 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 634-981 |
| Cow position: | chr23:24654042-24654389 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 645-1039 |
| Cow position: | chr23:25724107-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 646-1039 |
| Cow position: | chr23:24639153-24639546 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 680-1039 |
| Cow position: | chr23:25698685-25698326 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 719-1038 |
| Cow position: | chr23:24654043-24654362 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 115, 122 |
| Conread position: | 807-1050 |
| Cow position: | chr23:25698642-25698399 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.