Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 2-455 |
| Cow position: | chr24:17077961-17077508 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 288 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 2-963 |
| Cow position: | chr24:17035910-17034949 (view UCSC Genome Browser custom track) |
| Alignm length: | 965 |
| Alignm identity: | 603 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 2-978 |
| Cow position: | chr24:17035994-17035018 (view UCSC Genome Browser custom track) |
| Alignm length: | 981 |
| Alignm identity: | 624 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 2-1007 |
| Cow position: | chr24:17036078-17035074 (view UCSC Genome Browser custom track) |
| Alignm length: | 1008 |
| Alignm identity: | 655 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 2-1039 |
| Cow position: | chr24:17036414-17035377 (view UCSC Genome Browser custom track) |
| Alignm length: | 1041 |
| Alignm identity: | 668 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 6-999 |
| Cow position: | chr24:17036158-17035165 (view UCSC Genome Browser custom track) |
| Alignm length: | 997 |
| Alignm identity: | 641 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 42-378 |
| Cow position: | chr24:17013167-17013504 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 58-727 |
| Cow position: | chr24:17035602-17034934 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 279 |
| Conread position: | 69-1039 |
| Cow position: | chr24:17036431-17035461 (view UCSC Genome Browser custom track) |
| Alignm length: | 971 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-1038 |
| Cow position: | chr24:17036175-17035210 (view UCSC Genome Browser custom track) |
| Alignm length: | 968 |
| Alignm identity: | 637 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 350 |
| Conread position: | 98-462 |
| Cow position: | chr24:17013140-17013504 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 103-635 |
| Cow position: | chr24:17070524-17071056 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 224 |
| Conread position: | 103-754 |
| Cow position: | chr24:17078112-17077462 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 313 |
| Conread position: | 103-957 |
| Cow position: | chr24:17078364-17077510 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-1039 |
| Cow position: | chr24:17036481-17035545 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 617 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 413 |
| Conread position: | 106-557 |
| Cow position: | chr24:17070611-17071062 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-710 |
| Cow position: | chr24:17070464-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 283 |
| Conread position: | 130-1038 |
| Cow position: | chr24:17036619-17035714 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 137-1039 |
| Cow position: | chr24:17036531-17035629 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 379 |
| Conread position: | 145-1039 |
| Cow position: | chr24:17036189-17035293 (view UCSC Genome Browser custom track) |
| Alignm length: | 901 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 194 |
| Conread position: | 203-1039 |
| Cow position: | chr24:17078348-17077512 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 204-1076 |
| Cow position: | chr24:17036630-17035761 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 209-789 |
| Cow position: | chr24:17070462-17071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 363 |
| Conread position: | 221-546 |
| Cow position: | chr24:17013179-17013504 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-873 |
| Cow position: | chr24:17070399-17071044 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 11 |
| Conread position: | 305-652 |
| Cow position: | chr24:17013179-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 106 |
| Conread position: | 337-971 |
| Cow position: | chr24:17070421-17071056 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 384 |
| Conread position: | 340-1039 |
| Cow position: | chr24:17078380-17077680 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 389-732 |
| Cow position: | chr24:17013179-17013521 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 0 |
| Conread position: | 437-1039 |
| Cow position: | chr24:17070438-17071040 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 453-665 |
| Cow position: | chr24:16986425-16986637 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 134, 118 |
| Conread position: | 457-788 |
| Cow position: | chr24:17013165-17013494 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 555-765 |
| Cow position: | chr24:16986443-16986653 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 111, 100 |
| Conread position: | 563-882 |
| Cow position: | chr24:17013185-17013504 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 269, 277 |
| Conread position: | 590-1039 |
| Cow position: | chr24:17070423-17070872 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 254 |
| Conread position: | 605-1038 |
| Cow position: | chr24:17070353-17070787 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 611-921 |
| Cow position: | chr24:17013149-17013459 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 621-831 |
| Cow position: | chr24:16986425-16986635 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 126, 117 |
| Conread position: | 668-925 |
| Cow position: | chr24:16986388-16986645 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 684-1039 |
| Cow position: | chr24:17013138-17013493 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 186 |
| Conread position: | 722-1056 |
| Cow position: | chr24:17070387-17070720 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 318, 0 |
Show alignments to all cow chromosomes.