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Cow genome map

           
Conread name:
           
Ss1.1-Thy1-THY010070G10.5
        

               
Conread position:
               
2-750
               

               
Cow position:
               
chr25:34769992-34769244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
8-429
               

               
Cow position:
               
chr25:23420437-23420858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
8-499
               

               
Cow position:
               
chr25:34769734-34769243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
29-451
               

               
Cow position:
               
chr25:34732197-34731775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
5, 30
               

               
Conread position:
               
48-630
               

               
Cow position:
               
chr25:34769778-34769196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 138
               

               
Conread position:
               
55-910
               

               
Cow position:
               
chr25:33298916-33299771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
858
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 282
               

               
Conread position:
               
57-462
               

               
Cow position:
               
chr25:34447461-34447857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
377, 245
               

               
Conread position:
               
58-630
               

               
Cow position:
               
chr25:36801395-36801967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 89
               

               
Conread position:
               
59-496
               

               
Cow position:
               
chr25:33305298-33304866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
93-415
               

               
Cow position:
               
chr25:18642200-18641875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
103-501
               

               
Cow position:
               
chr25:33299468-33299861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
103-825
               

               
Cow position:
               
chr25:33157492-33156770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 65
               

               
Conread position:
               
103-832
               

               
Cow position:
               
chr25:34769975-34769246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
103-942
               

               
Cow position:
               
chr25:34447087-34447915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
841
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 153
               

               
Conread position:
               
104-464
               

               
Cow position:
               
chr25:22235979-22236339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
234, 248
               

               
Conread position:
               
130-453
               

               
Cow position:
               
chr25:3664275-3664598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
130-466
               

               
Cow position:
               
chr25:34734001-34733664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 129
               

               
Conread position:
               
132-375
               

               
Cow position:
               
chr25:427339-427582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
132-496
               

               
Cow position:
               
chr25:25652954-25653318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
327, 322
               

               
Conread position:
               
132-714
               

               
Cow position:
               
chr25:326675-327263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 290
               

               
Conread position:
               
132-1039
               

               
Cow position:
               
chr25:33298657-33299564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
910
               

               
Alignm identity:
               
589
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 211
               

               
Conread position:
               
136-1039
               

               
Cow position:
               
chr25:33298913-33299816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
906
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
445, 449
               

               
Conread position:
               
137-560
               

               
Cow position:
               
chr25:33127817-33128240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
137-618
               

               
Cow position:
               
chr25:23420398-23420879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
212, 217
               

               
Conread position:
               
137-620
               

               
Cow position:
               
chr25:34763261-34763741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
137-632
               

               
Cow position:
               
chr25:326764-327265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
71, 64
               

               
Conread position:
               
137-635
               

               
Cow position:
               
chr25:33127733-33128231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
137-711
               

               
Cow position:
               
chr25:33144864-33145435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 148
               

               
Conread position:
               
137-746
               

               
Cow position:
               
chr25:36801390-36801994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 109
               

               
Conread position:
               
137-828
               

               
Cow position:
               
chr25:33299166-33299853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
137-839
               

               
Cow position:
               
chr25:33306120-33305420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
42, 29
               

               
Conread position:
               
137-864
               

               
Cow position:
               
chr25:36801234-36801949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 122
               

               
Conread position:
               
137-918
               

               
Cow position:
               
chr25:34770025-34769244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
445, 438
               

               
Conread position:
               
137-954
               

               
Cow position:
               
chr25:34762928-34763739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
818
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
137-1056
               

               
Cow position:
               
chr25:36800730-36801636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
923
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 122
               

               
Conread position:
               
137-1058
               

               
Cow position:
               
chr25:33298746-33299666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
927
               

               
Alignm identity:
               
598
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
141-637
               

               
Cow position:
               
chr25:34473526-34474019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
143-589
               

               
Cow position:
               
chr25:414754-414316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
344, 54
               

               
Conread position:
               
143-1000
               

               
Cow position:
               
chr25:33298836-33299693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
859
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 279
               

               
Conread position:
               
144-548
               

               
Cow position:
               
chr25:22235935-22236339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
118, 112
               

               
Conread position:
               
144-597
               

               
Cow position:
               
chr25:3664037-3664490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
116, 112
               

               
Conread position:
               
144-682
               

               
Cow position:
               
chr25:34714056-34714590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
202, 193
               

               
Conread position:
               
144-805
               

               
Cow position:
               
chr25:33530083-33530744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-1015
               

               
Cow position:
               
chr25:25652378-25653249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
873
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
481, 477
               

               
Conread position:
               
145-597
               

               
Cow position:
               
chr25:3664122-3664574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-608
               

               
Cow position:
               
chr25:22235852-22236315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
145-878
               

               
Cow position:
               
chr25:24399120-24398403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
367, 75
               

               
Conread position:
               
145-885
               

               
Cow position:
               
chr25:33157533-33156794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
145-1039
               

               
Cow position:
               
chr25:34762852-34763740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
897
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 109
               

               
Conread position:
               
146-420
               

               
Cow position:
               
chr25:34733901-34733627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
194, 188
               

               
Conread position:
               
146-450
               

               
Cow position:
               
chr25:366749-367053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
162, 168
               

               
Conread position:
               
146-478
               

               
Cow position:
               
chr25:33127910-33128242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
197, 186
               

               
Conread position:
               
146-524
               

               
Cow position:
               
chr25:346472-346850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
162, 168
               

               
Conread position:
               
146-549
               

               
Cow position:
               
chr25:4657441-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
146-628
               

               
Cow position:
               
chr25:33144957-33145436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 79
               

               
Conread position:
               
146-788
               

               
Cow position:
               
chr25:34713890-34714532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
146-794
               

               
Cow position:
               
chr25:3663955-3664603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
146-882
               

               
Cow position:
               
chr25:326521-327263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
390, 526
               

               
Conread position:
               
146-904
               

               
Cow position:
               
chr25:34732584-34731826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 134
               

               
Conread position:
               
146-975
               

               
Cow position:
               
chr25:25652716-25653542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
835
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 139
               

               
Conread position:
               
146-1000
               

               
Cow position:
               
chr25:34770100-34769246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
855
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
146-1000
               

               
Cow position:
               
chr25:36800655-36801497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
857
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
434, 439
               

               
Conread position:
               
146-1011
               

               
Cow position:
               
chr25:34446962-34447819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
867
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
541, 514
               

               
Conread position:
               
146-1038
               

               
Cow position:
               
chr25:33298587-33299479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
895
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
435, 445
               

               
Conread position:
               
146-1039
               

               
Cow position:
               
chr25:25652212-25653105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
895
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
619, 615
               

               
Conread position:
               
146-1039
               

               
Cow position:
               
chr25:25652296-25653189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
896
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
563, 559
               

               
Conread position:
               
146-1039
               

               
Cow position:
               
chr25:25652464-25653357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
896
               

               
Alignm identity:
               
577
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 269
               

               
Conread position:
               
146-1039
               

               
Cow position:
               
chr25:36801075-36801956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
897
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 109
               

               
Conread position:
               
146-1056
               

               
Cow position:
               
chr25:33305774-33304894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
918
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
148-1061
               

               
Cow position:
               
chr25:34446880-34447785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
916
               

               
Alignm identity:
               
594
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
149-711
               

               
Cow position:
               
chr25:33127661-33128223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 107
               

               
Conread position:
               
150-669
               

               
Cow position:
               
chr25:23420327-23420846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 40
               

               
Conread position:
               
157-597
               

               
Cow position:
               
chr25:33530348-33530788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
262, 257
               

               
Conread position:
               
158-451
               

               
Cow position:
               
chr25:346568-346861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
158-873
               

               
Cow position:
               
chr25:34433725-34434428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
81, 87
               

               
Conread position:
               
159-1011
               

               
Cow position:
               
chr25:34770171-34769319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
855
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
168-499
               

               
Cow position:
               
chr25:18642209-18641875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 101
               

               
Conread position:
               
173-1038
               

               
Cow position:
               
chr25:33298530-33299395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
869
               

               
Alignm identity:
               
555
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
174-704
               

               
Cow position:
               
chr25:34763214-34763741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 81
               

               
Conread position:
               
175-554
               

               
Cow position:
               
chr25:36844567-36844197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
247, 224
               

               
Conread position:
               
180-405
               

               
Cow position:
               
chr25:427303-427528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
181-770
               

               
Cow position:
               
chr25:24385357-24384768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
160, 149
               

               
Conread position:
               
185-524
               

               
Cow position:
               
chr25:3676055-3676394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
221, 236
               

               
Conread position:
               
185-571
               

               
Cow position:
               
chr25:3636415-3636029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 51
               

               
Conread position:
               
185-677
               

               
Cow position:
               
chr25:33305339-33304853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
296, 21
               

               
Conread position:
               
187-1000
               

               
Cow position:
               
chr25:33306397-33305596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
821
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 53
               

               
Conread position:
               
195-637
               

               
Cow position:
               
chr25:36844631-36844198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
67, 61
               

               
Conread position:
               
199-524
               

               
Cow position:
               
chr25:34734016-34733691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
202-1050
               

               
Cow position:
               
chr25:34762825-34763666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
849
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 0
               

               
Conread position:
               
203-636
               

               
Cow position:
               
chr25:22235825-22236259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
203-1050
               

               
Cow position:
               
chr25:33298476-33299322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
850
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 81
               

               
Conread position:
               
204-652
               

               
Cow position:
               
chr25:34732106-34731660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
333, 351
               

               
Conread position:
               
204-1000
               

               
Cow position:
               
chr25:33306464-33305680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
804
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 119
               

               
Conread position:
               
205-534
               

               
Cow position:
               
chr25:366724-367053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
205-788
               

               
Cow position:
               
chr25:33144848-33145428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 164
               

               
Conread position:
               
205-798
               

               
Cow position:
               
chr25:36801374-36801967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
205-1039
               

               
Cow position:
               
chr25:34732609-34731775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
839
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 302
               

               
Conread position:
               
206-619
               

               
Cow position:
               
chr25:3675992-3676405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
137, 126
               

               
Conread position:
               
206-636
               

               
Cow position:
               
chr25:23267496-23267073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 116
               

               
Conread position:
               
206-994
               

               
Cow position:
               
chr25:36800547-36801335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
792
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 239
               

               
Conread position:
               
206-1040
               

               
Cow position:
               
chr25:25652188-25653022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
838
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
375, 379
               

               
Conread position:
               
207-853
               

               
Cow position:
               
chr25:3663932-3664579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
644, 0
               

               
Conread position:
               
207-1039
               

               
Cow position:
               
chr25:326330-327168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
846
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 162
               

               
Conread position:
               
208-579
               

               
Cow position:
               
chr25:4657463-4657092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
269, 275
               

               
Conread position:
               
208-830
               

               
Cow position:
               
chr25:34473509-34474125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 161
               

               
Conread position:
               
211-794
               

               
Cow position:
               
chr25:3636557-3635974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
213, 204
               

               
Conread position:
               
218-987
               

               
Cow position:
               
chr25:33157545-33156775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
773
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
225-883
               

               
Cow position:
               
chr25:34713885-34714540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
429, 453
               

               
Conread position:
               
227-591
               

               
Cow position:
               
chr25:33506769-33507135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
354, 0
               

               
Conread position:
               
233-813
               

               
Cow position:
               
chr25:33127661-33128241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
266-543
               

               
Cow position:
               
chr25:427305-427582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
269-837
               

               
Cow position:
               
chr25:33305421-33304861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
380, 17
               

               
Conread position:
               
271-800
               

               
Cow position:
               
chr25:22235810-22236339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-904
               

               
Cow position:
               
chr25:33530136-33530759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
409, 399
               

               
Conread position:
               
287-880
               

               
Cow position:
               
chr25:33144846-33145436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 166
               

               
Conread position:
               
287-1039
               

               
Cow position:
               
chr25:34732611-34731859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 130
               

               
Conread position:
               
290-635
               

               
Cow position:
               
chr25:3675992-3676337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
233, 227
               

               
Conread position:
               
296-801
               

               
Cow position:
               
chr25:34433530-34434029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
128, 77
               

               
Conread position:
               
296-833
               

               
Cow position:
               
chr25:3636556-3636019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
107, 93
               

               
Conread position:
               
296-999
               

               
Cow position:
               
chr25:34713703-34714407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 225
               

               
Conread position:
               
297-962
               

               
Cow position:
               
chr25:3663938-3664603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
300-644
               

               
Cow position:
               
chr25:34733999-34733655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
119, 130
               

               
Conread position:
               
304-664
               

               
Cow position:
               
chr25:33506762-33507121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
351, 0
               

               
Conread position:
               
305-614
               

               
Cow position:
               
chr25:366740-367049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
305-1011
               

               
Cow position:
               
chr25:24399212-24398521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
400, 166
               

               
Conread position:
               
308-881
               

               
Cow position:
               
chr25:33127651-33128227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
308-1000
               

               
Cow position:
               
chr25:34713800-34714492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 113
               

               
Conread position:
               
310-841
               

               
Cow position:
               
chr25:23420319-23420850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
310-885
               

               
Cow position:
               
chr25:34473527-34474099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
112, 104
               

               
Conread position:
               
310-1039
               

               
Cow position:
               
chr25:34770104-34769375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
311-634
               

               
Cow position:
               
chr25:4657444-4657121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
277, 272
               

               
Conread position:
               
311-703
               

               
Cow position:
               
chr25:346469-346861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
334-1057
               

               
Cow position:
               
chr25:33157513-33156791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 83
               

               
Conread position:
               
341-787
               

               
Cow position:
               
chr25:346412-346861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
351-1050
               

               
Cow position:
               
chr25:33157577-33156882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
355-1002
               

               
Cow position:
               
chr25:34762810-34763454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 211
               

               
Conread position:
               
362-945
               

               
Cow position:
               
chr25:24385344-24384761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
552, 544
               

               
Conread position:
               
367-1028
               

               
Cow position:
               
chr25:34732615-34731954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
625, 635
               

               
Conread position:
               
371-657
               

               
Cow position:
               
chr25:34734012-34733726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
52, 44
               

               
Conread position:
               
373-884
               

               
Cow position:
               
chr25:22235828-22236339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 294
               

               
Conread position:
               
374-702
               

               
Cow position:
               
chr25:366725-367053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
102, 107
               

               
Conread position:
               
374-787
               

               
Cow position:
               
chr25:3675992-3676405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
374-1050
               

               
Cow position:
               
chr25:25652188-25652864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-619
               

               
Cow position:
               
chr25:427330-427574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
375-1047
               

               
Cow position:
               
chr25:3663932-3664605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
376-801
               

               
Cow position:
               
chr25:4657463-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
308, 279
               

               
Conread position:
               
376-970
               

               
Cow position:
               
chr25:34473509-34474100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 122
               

               
Conread position:
               
376-1000
               

               
Cow position:
               
chr25:36800633-36801257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 220
               

               
Conread position:
               
395-939
               

               
Cow position:
               
chr25:23420320-23420865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
542, 0
               

               
Conread position:
               
426-969
               

               
Cow position:
               
chr25:34433492-34434029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 85
               

               
Conread position:
               
428-754
               

               
Cow position:
               
chr25:18642201-18641872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
439-888
               

               
Cow position:
               
chr25:36844639-36844199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
395, 286
               

               
Conread position:
               
442-964
               

               
Cow position:
               
chr25:33127703-33128224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
445-889
               

               
Cow position:
               
chr25:22235816-22236260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
446-1011
               

               
Cow position:
               
chr25:24385344-24384779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
238, 209
               

               
Conread position:
               
451-684
               

               
Cow position:
               
chr25:34433016-34433247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
213, 6
               

               
Conread position:
               
454-1055
               

               
Cow position:
               
chr25:34762825-34763423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 0
               

               
Conread position:
               
455-1031
               

               
Cow position:
               
chr25:33144846-33145419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 120
               

               
Conread position:
               
457-849
               

               
Cow position:
               
chr25:346447-346839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
187, 194
               

               
Conread position:
               
461-886
               

               
Cow position:
               
chr25:4657462-4657037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
201, 194
               

               
Conread position:
               
461-1040
               

               
Cow position:
               
chr25:3663934-3664513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 20
               

               
Conread position:
               
461-1044
               

               
Cow position:
               
chr25:34473510-34474090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
223, 212
               

               
Conread position:
               
463-1054
               

               
Cow position:
               
chr25:3636557-3635966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
199, 192
               

               
Conread position:
               
468-813
               

               
Cow position:
               
chr25:34733999-34733654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
472-1027
               

               
Cow position:
               
chr25:24385402-24384847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
218, 187
               

               
Conread position:
               
475-1009
               

               
Cow position:
               
chr25:23420316-23420850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 34
               

               
Conread position:
               
476-1039
               

               
Cow position:
               
chr25:33127653-33128215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
495-1050
               

               
Cow position:
               
chr25:34770171-34769617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
545, 0
               

               
Conread position:
               
516-793
               

               
Cow position:
               
chr25:427303-427581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
272, 0
               

               
Conread position:
               
530-1000
               

               
Cow position:
               
chr25:36800535-36801005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 85
               

               
Conread position:
               
532-832
               

               
Cow position:
               
chr25:18642181-18641878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
532-1038
               

               
Cow position:
               
chr25:23420054-23420543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
238, 19
               

               
Conread position:
               
536-968
               

               
Cow position:
               
chr25:36844626-36844203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
345, 277
               

               
Conread position:
               
541-1032
               

               
Cow position:
               
chr25:36800462-36800953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
541-1039
               

               
Cow position:
               
chr25:22235828-22236326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 329
               

               
Conread position:
               
542-742
               

               
Cow position:
               
chr25:34433020-34433220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
63, 58
               

               
Conread position:
               
542-864
               

               
Cow position:
               
chr25:366725-367047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
186, 192
               

               
Conread position:
               
542-919
               

               
Cow position:
               
chr25:346448-346825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
186, 192
               

               
Conread position:
               
542-948
               

               
Cow position:
               
chr25:3675992-3676398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
149, 117
               

               
Conread position:
               
542-1038
               

               
Cow position:
               
chr25:34433524-34434014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 81
               

               
Conread position:
               
544-969
               

               
Cow position:
               
chr25:4657463-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
544-1039
               

               
Cow position:
               
chr25:36800633-36801128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
544-1059
               

               
Cow position:
               
chr25:34473509-34474020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
146, 129
               

               
Conread position:
               
551-1039
               

               
Cow position:
               
chr25:34713875-34714363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
148, 131
               

               
Conread position:
               
556-832
               

               
Cow position:
               
chr25:34733995-34733719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
560-819
               

               
Cow position:
               
chr25:18641406-18641155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
563-1038
               

               
Cow position:
               
chr25:33144870-33145342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 142
               

               
Conread position:
               
563-1039
               

               
Cow position:
               
chr25:34446875-34447351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 53
               

               
Conread position:
               
563-1045
               

               
Cow position:
               
chr25:23420320-23420803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 294
               

               
Conread position:
               
564-1000
               

               
Cow position:
               
chr25:414753-414325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
278, 56
               

               
Conread position:
               
569-1044
               

               
Cow position:
               
chr25:33127661-33128136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 32
               

               
Conread position:
               
584-922
               

               
Cow position:
               
chr25:18642213-18641872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
590-810
               

               
Cow position:
               
chr25:34432984-34433204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
593-1000
               

               
Cow position:
               
chr25:346412-346822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
597-999
               

               
Cow position:
               
chr25:34433495-34433894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
252, 110
               

               
Conread position:
               
607-1038
               

               
Cow position:
               
chr25:36800444-36800875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
179, 174
               

               
Conread position:
               
615-1046
               

               
Cow position:
               
chr25:36844631-36844209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
278, 0
               

               
Conread position:
               
625-955
               

               
Cow position:
               
chr25:366724-367054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
627-879
               

               
Cow position:
               
chr25:427330-427582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 137
               

               
Conread position:
               
641-979
               

               
Cow position:
               
chr25:34733994-34733656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
646-1039
               

               
Cow position:
               
chr25:23420319-23420712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 196
               

               
Conread position:
               
647-1002
               

               
Cow position:
               
chr25:4657444-4657089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
256, 250
               

               
Conread position:
               
675-998
               

               
Cow position:
               
chr25:18642206-18641879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
677-1039
               

               
Cow position:
               
chr25:346412-346777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
681-1038
               

               
Cow position:
               
chr25:34433495-34433849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
180, 110
               

               
Conread position:
               
684-979
               

               
Cow position:
               
chr25:34762803-34763098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
689-1039
               

               
Cow position:
               
chr25:3676055-3676405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 58
               

               
Conread position:
               
698-1039
               

               
Cow position:
               
chr25:3663919-3664260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
699-1026
               

               
Cow position:
               
chr25:33530302-33530629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
703-1039
               

               
Cow position:
               
chr25:34732615-34732279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 146
               

               
Conread position:
               
709-1015
               

               
Cow position:
               
chr25:366724-367030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
103, 108
               

               
Conread position:
               
713-963
               

               
Cow position:
               
chr25:427332-427582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
114, 129
               

               
Conread position:
               
725-1004
               

               
Cow position:
               
chr25:34733994-34733715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
111, 123
               

               
Conread position:
               
729-1056
               

               
Cow position:
               
chr25:34446873-34447199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
749-1046
               

               
Cow position:
               
chr25:427278-427581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
781-1011
               

               
Cow position:
               
chr25:22235816-22236046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
787-1057
               

               
Cow position:
               
chr25:34732615-34732346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
253, 0
               

               
Conread position:
               
791-1039
               

               
Cow position:
               
chr25:34734012-34733764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
796-1039
               

               
Cow position:
               
chr25:4657463-4657220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
875-1041
               

               
Cow position:
               
chr25:33144846-33145012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.