Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 1-1059 |
| Cow position: | chr28:7757547-7758588 (view UCSC Genome Browser custom track) |
| Alignm length: | 1070 |
| Alignm identity: | 625 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 3-467 |
| Cow position: | chr28:9253152-9253617 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 6-413 |
| Cow position: | chr28:34673491-34673898 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 28-864 |
| Cow position: | chr28:7757492-7758326 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 551, 10 |
| Conread position: | 38-965 |
| Cow position: | chr28:9298651-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 55-894 |
| Cow position: | chr28:34695761-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 201 |
| Conread position: | 55-1039 |
| Cow position: | chr28:7757853-7758820 (view UCSC Genome Browser custom track) |
| Alignm length: | 989 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 211 |
| Conread position: | 57-729 |
| Cow position: | chr28:7810283-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 64-1042 |
| Cow position: | chr28:11334195-11333217 (view UCSC Genome Browser custom track) |
| Alignm length: | 991 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 206 |
| Conread position: | 104-466 |
| Cow position: | chr28:33210294-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 138 |
| Conread position: | 120-1038 |
| Cow position: | chr28:9298649-9299549 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 27 |
| Conread position: | 125-1050 |
| Cow position: | chr28:9298570-9299476 (view UCSC Genome Browser custom track) |
| Alignm length: | 931 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 137-550 |
| Cow position: | chr28:33210243-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 396 |
| Conread position: | 137-753 |
| Cow position: | chr28:9253034-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 570, 0 |
| Conread position: | 137-788 |
| Cow position: | chr28:34695927-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 119 |
| Conread position: | 137-1039 |
| Cow position: | chr28:7757431-7758333 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 141-903 |
| Cow position: | chr28:7758107-7758853 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 141-922 |
| Cow position: | chr28:9289937-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 14 |
| Conread position: | 146-700 |
| Cow position: | chr28:34673379-34673933 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 331 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 146-751 |
| Cow position: | chr28:11333777-11333171 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 370 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 181, 177 |
| Conread position: | 146-798 |
| Cow position: | chr28:7758196-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 107 |
| Conread position: | 146-804 |
| Cow position: | chr28:7810288-7810937 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 147-1000 |
| Cow position: | chr28:7757357-7758210 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 177-1039 |
| Cow position: | chr28:34695716-34696577 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 196-798 |
| Cow position: | chr28:9253009-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-562 |
| Cow position: | chr28:7810582-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 148, 140 |
| Conread position: | 200-756 |
| Cow position: | chr28:34673348-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 6, 59 |
| Conread position: | 203-634 |
| Cow position: | chr28:33210225-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 53 |
| Conread position: | 217-954 |
| Cow position: | chr28:34695839-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 147 |
| Conread position: | 281-921 |
| Cow position: | chr28:9253010-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 394 |
| Conread position: | 281-944 |
| Cow position: | chr28:11334146-11333483 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 241 |
| Conread position: | 305-669 |
| Cow position: | chr28:33210243-33210608 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 0 |
| Conread position: | 307-1039 |
| Cow position: | chr28:7757349-7758081 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 167 |
| Conread position: | 309-966 |
| Cow position: | chr28:9252954-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 309-979 |
| Cow position: | chr28:7810283-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 526, 254 |
| Conread position: | 310-1007 |
| Cow position: | chr28:9289938-9290631 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 311-832 |
| Cow position: | chr28:34673376-34673897 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 223, 204 |
| Conread position: | 340-916 |
| Cow position: | chr28:9299189-9299758 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 345 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 344-1064 |
| Cow position: | chr28:9252904-9253625 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 345-993 |
| Cow position: | chr28:11334249-11333602 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 7 |
| Conread position: | 352-768 |
| Cow position: | chr28:7758470-7758886 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 269 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 355, 308 |
| Conread position: | 353-750 |
| Cow position: | chr28:34679579-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 239, 51 |
| Conread position: | 357-1039 |
| Cow position: | chr28:34695811-34696493 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 171 |
| Conread position: | 366-1039 |
| Cow position: | chr28:9289910-9290579 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 408 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 113, 43 |
| Conread position: | 374-802 |
| Cow position: | chr28:33210228-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 0 |
| Conread position: | 375-840 |
| Cow position: | chr28:34673356-34673821 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 292 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 133, 146 |
| Conread position: | 395-1050 |
| Cow position: | chr28:7810285-7810930 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 119 |
| Conread position: | 454-885 |
| Cow position: | chr28:33210223-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 210 |
| Conread position: | 456-1000 |
| Cow position: | chr28:34673353-34673897 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 341 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 479-1039 |
| Cow position: | chr28:7757191-7757745 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 494-992 |
| Cow position: | chr28:9289708-9290202 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 302 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 65, 79 |
| Conread position: | 530-1039 |
| Cow position: | chr28:11334233-11333724 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 542-970 |
| Cow position: | chr28:33210228-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 0 |
| Conread position: | 613-1004 |
| Cow position: | chr28:34679571-34679179 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 230, 22 |
| Conread position: | 622-1039 |
| Cow position: | chr28:33210223-33210642 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 624-1005 |
| Cow position: | chr28:34673353-34673734 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 681-979 |
| Cow position: | chr28:7810244-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 168, 46 |
| Conread position: | 706-1048 |
| Cow position: | chr28:33210223-33210565 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 165 |
Show alignments to all cow chromosomes.