Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 33-711 |
| Cow position: | chr3:62722247-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 154 |
| Conread position: | 57-972 |
| Cow position: | chr3:62742381-62743270 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 129 |
| Conread position: | 63-921 |
| Cow position: | chr3:62742637-62743471 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 19 |
| Conread position: | 64-967 |
| Cow position: | chr3:62742556-62743433 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 85 |
| Conread position: | 103-631 |
| Cow position: | chr3:62722092-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 103-713 |
| Cow position: | chr3:77351175-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 372 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 71, 62 |
| Conread position: | 103-731 |
| Cow position: | chr3:68027157-68027784 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 106-789 |
| Cow position: | chr3:62722257-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 403 |
| Conread position: | 118-627 |
| Cow position: | chr3:68045849-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 317 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 310, 298 |
| Conread position: | 137-496 |
| Cow position: | chr3:20194905-20195264 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 285, 278 |
| Conread position: | 137-719 |
| Cow position: | chr3:68045784-68046364 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 142-825 |
| Cow position: | chr3:77351304-77350632 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 422 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 146-695 |
| Cow position: | chr3:20194746-20195295 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-780 |
| Cow position: | chr3:77351215-77350593 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 384 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 146-852 |
| Cow position: | chr3:68027032-68027738 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 146-878 |
| Cow position: | chr3:62722301-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 431 |
| Conread position: | 146-892 |
| Cow position: | chr3:68045625-68046369 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 150-579 |
| Cow position: | chr3:20194833-20195263 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 150-922 |
| Cow position: | chr3:62722381-62721609 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 151-969 |
| Cow position: | chr3:62742226-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 12 |
| Conread position: | 211-787 |
| Cow position: | chr3:20194727-20195303 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-735 |
| Cow position: | chr3:62743034-62743534 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 315 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 273, 75 |
| Conread position: | 275-919 |
| Cow position: | chr3:68027077-68027721 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 141 |
| Conread position: | 275-919 |
| Cow position: | chr3:68045670-68046314 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 290-542 |
| Cow position: | chr3:20194446-20194698 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 126, 143 |
| Conread position: | 296-872 |
| Cow position: | chr3:20194728-20195304 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 125 |
| Conread position: | 305-1011 |
| Cow position: | chr3:68045616-68046322 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 309-916 |
| Cow position: | chr3:77351305-77350707 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 366 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 124 |
| Conread position: | 309-1039 |
| Cow position: | chr3:62722306-62721576 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 717, 703 |
| Conread position: | 314-1011 |
| Cow position: | chr3:68027032-68027729 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 195 |
| Conread position: | 345-1032 |
| Cow position: | chr3:62742250-62742932 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 72 |
| Conread position: | 350-832 |
| Cow position: | chr3:77351180-77350706 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 203, 81 |
| Conread position: | 374-597 |
| Cow position: | chr3:20194446-20194669 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 126, 138 |
| Conread position: | 376-1057 |
| Cow position: | chr3:62722323-62721643 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 664, 0 |
| Conread position: | 379-954 |
| Cow position: | chr3:20194727-20195302 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 348 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 427-1039 |
| Cow position: | chr3:68045654-68046266 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 249 |
| Conread position: | 431-1008 |
| Cow position: | chr3:68045574-68046151 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 117 |
| Conread position: | 437-664 |
| Cow position: | chr3:16020400-16020177 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 437-1038 |
| Cow position: | chr3:68027071-68027672 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 420 |
| Conread position: | 463-1041 |
| Cow position: | chr3:20194727-20195305 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 519-747 |
| Cow position: | chr3:16020402-16020178 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 549-1038 |
| Cow position: | chr3:68045608-68046097 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 550-1038 |
| Cow position: | chr3:68027016-68027504 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 564-1039 |
| Cow position: | chr3:62722387-62721912 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 49 |
| Conread position: | 684-1038 |
| Cow position: | chr3:68045575-68045929 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 174, 169 |
| Conread position: | 789-1011 |
| Cow position: | chr3:20194441-20194663 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.