Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 74-882 |
| Cow position: | chr6:49396167-49396969 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 93-827 |
| Cow position: | chr6:49396264-49396998 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 174 |
| Conread position: | 103-993 |
| Cow position: | chr6:49340553-49341443 (view UCSC Genome Browser custom track) |
| Alignm length: | 891 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-1014 |
| Cow position: | chr6:49340469-49341380 (view UCSC Genome Browser custom track) |
| Alignm length: | 913 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 312 |
| Conread position: | 137-1038 |
| Cow position: | chr6:49340419-49341320 (view UCSC Genome Browser custom track) |
| Alignm length: | 904 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 435 |
| Conread position: | 137-1050 |
| Cow position: | chr6:49428579-49429491 (view UCSC Genome Browser custom track) |
| Alignm length: | 917 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 200 |
| Conread position: | 145-1000 |
| Cow position: | chr6:49428419-49429274 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 125 |
| Conread position: | 146-416 |
| Cow position: | chr6:49429260-49429528 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 234, 0 |
| Conread position: | 146-882 |
| Cow position: | chr6:49428756-49429492 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 375 |
| Conread position: | 146-896 |
| Cow position: | chr6:49396155-49396899 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 146-1039 |
| Cow position: | chr6:49428336-49429229 (view UCSC Genome Browser custom track) |
| Alignm length: | 897 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 146-1050 |
| Cow position: | chr6:49428504-49429407 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 120 |
| Conread position: | 146-1058 |
| Cow position: | chr6:49428252-49429163 (view UCSC Genome Browser custom track) |
| Alignm length: | 917 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 148-1000 |
| Cow position: | chr6:49395905-49396751 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 150-998 |
| Cow position: | chr6:49428675-49429523 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 276 |
| Conread position: | 152-648 |
| Cow position: | chr6:49362369-49362853 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 319 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 103, 114 |
| Conread position: | 166-1050 |
| Cow position: | chr6:49395753-49396632 (view UCSC Genome Browser custom track) |
| Alignm length: | 895 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 190 |
| Conread position: | 197-732 |
| Cow position: | chr6:49362330-49362853 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 330 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 301, 0 |
| Conread position: | 198-1039 |
| Cow position: | chr6:49395871-49396706 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 202-1038 |
| Cow position: | chr6:49340400-49341236 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 453 |
| Conread position: | 208-1057 |
| Cow position: | chr6:49428230-49429078 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 184 |
| Conread position: | 271-1000 |
| Cow position: | chr6:49428207-49428938 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 213 |
| Conread position: | 280-1000 |
| Cow position: | chr6:49362088-49362785 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 72 |
| Conread position: | 281-1039 |
| Cow position: | chr6:49340395-49341153 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 313-1011 |
| Cow position: | chr6:49396232-49396930 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 104 |
| Conread position: | 358-1039 |
| Cow position: | chr6:49340388-49341069 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 297 |
| Conread position: | 371-1050 |
| Cow position: | chr6:49428224-49428903 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 670 |
| Conread position: | 422-1039 |
| Cow position: | chr6:49340368-49340985 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 99 |
| Conread position: | 530-726 |
| Cow position: | chr6:39664462-39664266 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 584-1038 |
| Cow position: | chr6:49340362-49340816 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 321 |
| Conread position: | 784-1015 |
| Cow position: | chr6:49428218-49428449 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 73 |
Show alignments to all cow chromosomes.