Cow genome map

Conread name: Ss1.1-Thy1-THY010070G10.5

Conread position: 1-598
Cow position: chr7:11601056-11600459 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 1-676
Cow position: chr7:1439600-1440276 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 39

Conread position: 2-882
Cow position: chr7:3179997-3180876 (view UCSC Genome Browser custom track)
Alignm length: 892
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 32

Conread position: 2-956
Cow position: chr7:42879228-42878274 (view UCSC Genome Browser custom track)
Alignm length: 960
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 57

Conread position: 2-1039
Cow position: chr7:1014405-1015436 (view UCSC Genome Browser custom track)
Alignm length: 1041
Alignm identity: 634
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 33

Conread position: 7-676
Cow position: chr7:1014824-1015495 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 28

Conread position: 38-1038
Cow position: chr7:3179780-3180781 (view UCSC Genome Browser custom track)
Alignm length: 1006
Alignm identity: 654
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 44

Conread position: 56-496
Cow position: chr7:18390348-18390788 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 274
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 57-1038
Cow position: chr7:1014376-1015351 (view UCSC Genome Browser custom track)
Alignm length: 987
Alignm identity: 619
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 77

Conread position: 66-631
Cow position: chr7:3180312-3180877 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 202

Conread position: 102-921
Cow position: chr7:1014667-1015488 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 152

Conread position: 103-921
Cow position: chr7:1439451-1440269 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 137

Conread position: 103-1011
Cow position: chr7:3179762-3180670 (view UCSC Genome Browser custom track)
Alignm length: 913
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 150

Conread position: 103-1038
Cow position: chr7:1014338-1015267 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 151

Conread position: 103-1050
Cow position: chr7:3179930-3180875 (view UCSC Genome Browser custom track)
Alignm length: 952
Alignm identity: 611
Alignm E-value: 0
Alignm gaps (pig, cow): 728, 737

Conread position: 105-698
Cow position: chr7:11601036-11600443 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 478

Conread position: 105-843
Cow position: chr7:11601204-11600466 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 556, 550

Conread position: 105-1005
Cow position: chr7:8277327-8278227 (view UCSC Genome Browser custom track)
Alignm length: 912
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 28

Conread position: 109-1038
Cow position: chr7:42879205-42878276 (view UCSC Genome Browser custom track)
Alignm length: 933
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 474, 489

Conread position: 123-999
Cow position: chr7:8324818-8325694 (view UCSC Genome Browser custom track)
Alignm length: 893
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 48

Conread position: 132-1038
Cow position: chr7:3179707-3180613 (view UCSC Genome Browser custom track)
Alignm length: 913
Alignm identity: 602
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 124

Conread position: 137-416
Cow position: chr7:28846690-28846969 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 179
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 194, 200

Conread position: 137-750
Cow position: chr7:8277947-8278558 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 38

Conread position: 142-1039
Cow position: chr7:42879257-42878359 (view UCSC Genome Browser custom track)
Alignm length: 900
Alignm identity: 588
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 885

Conread position: 144-450
Cow position: chr7:11600745-11600439 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 188
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 201, 189

Conread position: 144-620
Cow position: chr7:28846613-28847089 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 296
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 56, 63

Conread position: 144-858
Cow position: chr7:12293286-12294000 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 414
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 634, 640

Conread position: 144-1000
Cow position: chr7:8325259-8326115 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 41

Conread position: 146-696
Cow position: chr7:18390270-18390820 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 146-749
Cow position: chr7:8325513-8326116 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 29

Conread position: 146-765
Cow position: chr7:18390186-18390805 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 186

Conread position: 146-831
Cow position: chr7:8243410-8244092 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 18

Conread position: 146-832
Cow position: chr7:11434946-11434281 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 24

Conread position: 146-966
Cow position: chr7:8277620-8278440 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 104

Conread position: 146-999
Cow position: chr7:8277704-8278555 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 110

Conread position: 146-1000
Cow position: chr7:8242991-8243844 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 31

Conread position: 146-1000
Cow position: chr7:8324757-8325611 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 23

Conread position: 146-1039
Cow position: chr7:1014297-1015184 (view UCSC Genome Browser custom track)
Alignm length: 898
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 37

Conread position: 185-595
Cow position: chr7:1438312-1438722 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 247
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 89, 103

Conread position: 195-1038
Cow position: chr7:42879287-42878444 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 403

Conread position: 197-1000
Cow position: chr7:8277587-8278390 (view UCSC Genome Browser custom track)
Alignm length: 814
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 207

Conread position: 198-753
Cow position: chr7:11434824-11434276 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 346
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 84, 52

Conread position: 198-840
Cow position: chr7:18390156-18390796 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 199-918
Cow position: chr7:8243379-8244095 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 436
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 67, 50

Conread position: 205-961
Cow position: chr7:11601188-11600432 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 127

Conread position: 205-1039
Cow position: chr7:1014272-1015100 (view UCSC Genome Browser custom track)
Alignm length: 838
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 211

Conread position: 207-975
Cow position: chr7:1014688-1015456 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 62

Conread position: 211-943
Cow position: chr7:12293269-12294001 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 651, 658

Conread position: 212-999
Cow position: chr7:8325243-8326030 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 61

Conread position: 215-1000
Cow position: chr7:3179706-3180491 (view UCSC Genome Browser custom track)
Alignm length: 790
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 205

Conread position: 216-870
Cow position: chr7:28846433-28847089 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 383
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 58, 63

Conread position: 259-1038
Cow position: chr7:11601221-11600439 (view UCSC Genome Browser custom track)
Alignm length: 785
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 322

Conread position: 274-933
Cow position: chr7:18390146-18390805 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 136

Conread position: 278-996
Cow position: chr7:1439458-1440176 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 66

Conread position: 300-944
Cow position: chr7:28846433-28847077 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 115

Conread position: 309-1000
Cow position: chr7:42879341-42878650 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 324-1039
Cow position: chr7:3179646-3180362 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 510

Conread position: 326-767
Cow position: chr7:1438285-1438726 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 261
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 350-993
Cow position: chr7:8242943-8243585 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 389
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 57, 61

Conread position: 350-1000
Cow position: chr7:42879384-42878734 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 246

Conread position: 353-1000
Cow position: chr7:8242862-8243508 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 392
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 86, 56

Conread position: 353-1000
Cow position: chr7:8277323-8277970 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 405
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 78, 85

Conread position: 355-999
Cow position: chr7:1439451-1440095 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 53

Conread position: 358-1015
Cow position: chr7:1438068-1438722 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 378
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 8

Conread position: 359-1019
Cow position: chr7:18390147-18390808 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 65

Conread position: 365-1026
Cow position: chr7:12293339-12294000 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 385
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 325, 318

Conread position: 376-1000
Cow position: chr7:8324735-8325359 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 130

Conread position: 379-1012
Cow position: chr7:12293269-12293902 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 370
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 27, 31

Conread position: 422-1000
Cow position: chr7:11601223-11600645 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 437-1000
Cow position: chr7:8277237-8277802 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 338
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 14, 142

Conread position: 450-1039
Cow position: chr7:18390156-18390743 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 13

Conread position: 452-1039
Cow position: chr7:1014267-1014848 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 0

Conread position: 454-917
Cow position: chr7:8324729-8325192 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 311
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 74, 50

Conread position: 463-1029
Cow position: chr7:12293269-12293832 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 339
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 557, 0

Conread position: 468-1041
Cow position: chr7:28846433-28847006 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 347
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 382, 377

Conread position: 469-682
Cow position: chr7:16643324-16643537 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 102, 108

Conread position: 511-1039
Cow position: chr7:18390047-18390575 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 159

Conread position: 531-999
Cow position: chr7:1014096-1014562 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 281
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 114, 28

Conread position: 543-1039
Cow position: chr7:18389995-18390491 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 221

Conread position: 548-1000
Cow position: chr7:8242805-8243257 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 282
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 41

Conread position: 596-1027
Cow position: chr7:1014246-1014676 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 278
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 254, 10

Conread position: 596-1039
Cow position: chr7:12293318-12293761 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 262
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 163, 169

Conread position: 604-915
Cow position: chr7:1439448-1439762 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 210
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 230, 140

Conread position: 605-1009
Cow position: chr7:1014084-1014488 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 237
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 124, 141

Conread position: 629-1000
Cow position: chr7:42879442-42879070 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 238
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 59

Conread position: 731-1039
Cow position: chr7:12293285-12293593 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 187
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.