Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070G10.5 |
| Conread position: | 4-462 |
| Cow position: | chrX:25310108-25310566 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 38-384 |
| Cow position: | chrX:29045009-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 127 |
| Conread position: | 57-832 |
| Cow position: | chrX:25309741-25310516 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 358 |
| Conread position: | 59-567 |
| Cow position: | chrX:25310079-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 59-819 |
| Cow position: | chrX:25324978-25324220 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 524, 533 |
| Conread position: | 64-468 |
| Cow position: | chrX:29045066-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 100, 108 |
| Conread position: | 74-644 |
| Cow position: | chrX:29045224-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 88-1038 |
| Cow position: | chrX:29045777-29044848 (view UCSC Genome Browser custom track) |
| Alignm length: | 955 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 249 |
| Conread position: | 103-987 |
| Cow position: | chrX:25325102-25324220 (view UCSC Genome Browser custom track) |
| Alignm length: | 892 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 31 |
| Conread position: | 103-999 |
| Cow position: | chrX:25325690-25324794 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 96 |
| Conread position: | 103-1000 |
| Cow position: | chrX:25325354-25324457 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 250 |
| Conread position: | 103-1038 |
| Cow position: | chrX:25325186-25324251 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 82 |
| Conread position: | 103-1039 |
| Cow position: | chrX:25325270-25324334 (view UCSC Genome Browser custom track) |
| Alignm length: | 943 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 31 |
| Conread position: | 103-1039 |
| Cow position: | chrX:25325522-25324586 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 230 |
| Conread position: | 106-1014 |
| Cow position: | chrX:25325435-25324527 (view UCSC Genome Browser custom track) |
| Alignm length: | 916 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 141 |
| Conread position: | 132-402 |
| Cow position: | chrX:14181212-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 251, 243 |
| Conread position: | 132-559 |
| Cow position: | chrX:13826602-13826175 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 284, 294 |
| Conread position: | 137-664 |
| Cow position: | chrX:13826765-13826239 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 518, 0 |
| Conread position: | 137-726 |
| Cow position: | chrX:25309989-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 117 |
| Conread position: | 137-734 |
| Cow position: | chrX:29045245-29044648 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 137-788 |
| Cow position: | chrX:13826849-13826198 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 137-823 |
| Cow position: | chrX:14181627-14180941 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 363 |
| Conread position: | 137-966 |
| Cow position: | chrX:25309737-25310566 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 181 |
| Conread position: | 137-1038 |
| Cow position: | chrX:25325572-25324671 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 183 |
| Conread position: | 146-843 |
| Cow position: | chrX:13826924-13826227 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-804 |
| Cow position: | chrX:29045318-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 267 |
| Conread position: | 152-485 |
| Cow position: | chrX:13826498-13826165 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-749 |
| Cow position: | chrX:14181524-14180931 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 195-1000 |
| Cow position: | chrX:25325766-25324961 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 75 |
| Conread position: | 196-916 |
| Cow position: | chrX:12627345-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 432 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 206-989 |
| Cow position: | chrX:13826948-13826165 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 140 |
| Conread position: | 209-886 |
| Cow position: | chrX:14181639-14180963 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 235-1000 |
| Cow position: | chrX:25309667-25310432 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 278-1038 |
| Cow position: | chrX:25325767-25325007 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 296-990 |
| Cow position: | chrX:14181636-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 183 |
| Conread position: | 305-1011 |
| Cow position: | chrX:13826933-13826227 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 122 |
| Conread position: | 316-972 |
| Cow position: | chrX:29045318-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 200 |
| Conread position: | 353-898 |
| Cow position: | chrX:29045197-29044652 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 511, 521 |
| Conread position: | 353-1038 |
| Cow position: | chrX:25325776-25325091 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 168 |
| Conread position: | 373-1031 |
| Cow position: | chrX:13826949-13826291 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 141 |
| Conread position: | 377-1039 |
| Cow position: | chrX:14181639-14180977 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 198 |
| Conread position: | 430-1000 |
| Cow position: | chrX:29045288-29044718 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 86 |
| Conread position: | 460-1038 |
| Cow position: | chrX:14181640-14181062 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 471-1000 |
| Cow position: | chrX:29045331-29044802 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 135 |
| Conread position: | 531-917 |
| Cow position: | chrX:29045838-29045452 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 541-1039 |
| Cow position: | chrX:13826949-13826451 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 208, 199 |
| Conread position: | 572-1002 |
| Cow position: | chrX:25309668-25310098 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 578-1038 |
| Cow position: | chrX:25325887-25325427 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 601-990 |
| Cow position: | chrX:25325780-25325391 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 616-999 |
| Cow position: | chrX:29045837-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 648-999 |
| Cow position: | chrX:25309660-25310011 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 34, 15 |
Show alignments to all cow chromosomes.