Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01F120100.5 |
| Conread position: | 92-370 |
| Cow position: | chr11:9977569-9977303 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 139, 16 |
| Conread position: | 98-365 |
| Cow position: | chr11:72817-72559 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 126, 16 |
| Conread position: | 108-369 |
| Cow position: | chr11:35130643-35130911 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 249 |
| Conread position: | 109-374 |
| Cow position: | chr11:3254122-3253855 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 125-375 |
| Cow position: | chr11:13581796-13581544 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 135-358 |
| Cow position: | chr11:56672119-56672339 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 169-371 |
| Cow position: | chr11:12047041-12047236 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 169-371 |
| Cow position: | chr11:43009450-43009651 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 95 |
| Conread position: | 169-375 |
| Cow position: | chr11:45547736-45547942 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 115 |
| Conread position: | 205-373 |
| Cow position: | chr11:49838813-49838982 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 104 |
| Conread position: | 353-855 |
| Cow position: | chr11:32285930-32285460 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 322 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 246, 23 |
| Conread position: | 362-848 |
| Cow position: | chr11:42427211-42427681 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 54, 190 |
| Conread position: | 370-731 |
| Cow position: | chr11:30134450-30134098 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 382-791 |
| Cow position: | chr11:72015128-72015527 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 382-857 |
| Cow position: | chr11:59629241-59628788 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 10 |
| Conread position: | 383-1070 |
| Cow position: | chr11:28051762-28051116 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 384-795 |
| Cow position: | chr11:8249878-8249477 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 385-612 |
| Cow position: | chr11:25178844-25179069 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 31, 148 |
| Conread position: | 385-790 |
| Cow position: | chr11:17911425-17911025 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 386-848 |
| Cow position: | chr11:27282055-27282515 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 30, 140 |
| Conread position: | 387-727 |
| Cow position: | chr11:7684650-7684977 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 389-743 |
| Cow position: | chr11:24241359-24241705 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 111 |
| Conread position: | 398-536 |
| Cow position: | chr11:49077981-49077841 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 435-726 |
| Cow position: | chr11:13930991-13931276 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 91 |
| Conread position: | 442-860 |
| Cow position: | chr11:10864590-10865012 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 148, 122 |
| Conread position: | 465-819 |
| Cow position: | chr11:21439910-21440262 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 99, 63 |
Show alignments to all cow chromosomes.