Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01F120100.5 |
| Conread position: | 40-404 |
| Cow position: | chr5:31544541-31544890 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 94-371 |
| Cow position: | chr5:44216156-44216434 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 99-371 |
| Cow position: | chr5:39416877-39417158 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 152-369 |
| Cow position: | chr5:15682862-15682643 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 177-371 |
| Cow position: | chr5:53614045-53614237 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 183-371 |
| Cow position: | chr5:68472210-68472020 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 33, 178 |
| Conread position: | 334-532 |
| Cow position: | chr5:29125167-29124967 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 357-848 |
| Cow position: | chr5:14879002-14878510 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 378-520 |
| Cow position: | chr5:27844359-27844216 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 380-865 |
| Cow position: | chr5:27486306-27486780 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 382-744 |
| Cow position: | chr5:49128038-49128392 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 382-848 |
| Cow position: | chr5:51950499-51950957 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 115 |
| Conread position: | 382-859 |
| Cow position: | chr5:24149472-24149951 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 178 |
| Conread position: | 382-1088 |
| Cow position: | chr5:7371574-7370870 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 177 |
| Conread position: | 384-656 |
| Cow position: | chr5:57906644-57906909 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 245, 29 |
| Conread position: | 384-821 |
| Cow position: | chr5:6185395-6185818 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 64 |
| Conread position: | 384-860 |
| Cow position: | chr5:50158610-50159071 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 385-555 |
| Cow position: | chr5:61564291-61564461 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 99 |
| Conread position: | 385-735 |
| Cow position: | chr5:7504810-7504464 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 385-735 |
| Cow position: | chr5:52432061-52432404 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 385-783 |
| Cow position: | chr5:27957749-27958139 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 31, 70 |
| Conread position: | 385-793 |
| Cow position: | chr5:39248589-39248190 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 385-794 |
| Cow position: | chr5:27062404-27062005 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 385-833 |
| Cow position: | chr5:26071641-26071199 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 244, 22 |
| Conread position: | 385-848 |
| Cow position: | chr5:658511-658975 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 298 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 31, 117 |
| Conread position: | 385-848 |
| Cow position: | chr5:29439388-29438939 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 311 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 385-850 |
| Cow position: | chr5:27684606-27684127 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 385-860 |
| Cow position: | chr5:34166032-34166498 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 311 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 387-772 |
| Cow position: | chr5:31996655-31997033 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 242, 149 |
| Conread position: | 454-797 |
| Cow position: | chr5:4351636-4351978 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 605-943 |
| Cow position: | chr5:27843013-27842672 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 21, 67 |
| Conread position: | 633-935 |
| Cow position: | chr5:3552167-3551869 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 79, 101 |
| Conread position: | 636-1021 |
| Cow position: | chr5:58096247-58096632 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 745-1045 |
| Cow position: | chr5:54110023-54110319 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 78, 197 |
| Conread position: | 750-1176 |
| Cow position: | chr5:33994039-33994469 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 73, 121 |
Show alignments to all cow chromosomes.