Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010004F02.5 |
| Conread position: | 1-88 |
| Cow position: | |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-94 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-95 |
| Cow position: | |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-96 |
| Cow position: | |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-96 |
| Cow position: | |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-97 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-97 |
| Cow position: | |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-97 |
| Cow position: | |
| Alignm length: | 97 |
| Alignm identity: | 84 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-97 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-97 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 93, 85 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-101 |
| Cow position: | |
| Alignm length: | 101 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-102 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-107 |
| Cow position: | |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-120 |
| Cow position: | |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 1-127 |
| Cow position: | |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-131 |
| Cow position: | |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-131 |
| Cow position: | |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 1-134 |
| Cow position: | |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 2-92 |
| Cow position: | |
| Alignm length: | 91 |
| Alignm identity: | 79 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-93 |
| Cow position: | |
| Alignm length: | 92 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-95 |
| Cow position: | |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-99 |
| Cow position: | |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 2-99 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-103 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-98 |
| Cow position: | |
| Alignm length: | 96 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-99 |
| Cow position: | |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-102 |
| Cow position: | |
| Alignm length: | 100 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-102 |
| Cow position: | |
| Alignm length: | 100 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-134 |
| Cow position: | |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 101 |
| Conread position: | 4-99 |
| Cow position: | |
| Alignm length: | 96 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 4-112 |
| Cow position: | |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 5-95 |
| Cow position: | |
| Alignm length: | 91 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-99 |
| Cow position: | |
| Alignm length: | 96 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 6-114 |
| Cow position: | |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 6-124 |
| Cow position: | |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 101, 97 |
| Conread position: | 9-93 |
| Cow position: | |
| Alignm length: | 85 |
| Alignm identity: | 75 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-98 |
| Cow position: | |
| Alignm length: | 90 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-99 |
| Cow position: | |
| Alignm length: | 91 |
| Alignm identity: | 80 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-131 |
| Cow position: | |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 113, 82 |
| Conread position: | 10-103 |
| Cow position: | |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-99 |
| Cow position: | |
| Alignm length: | 87 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-101 |
| Cow position: | |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-102 |
| Cow position: | |
| Alignm length: | 90 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 13-134 |
| Cow position: | |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 14-141 |
| Cow position: | |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-98 |
| Cow position: | |
| Alignm length: | 83 |
| Alignm identity: | 77 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.