Cow genome map

Conread name: Ss1.1-Utr1-UTR010004F02.5

Conread position: 1-95
Cow position: chr14:10858616-10858710 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 83
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-95
Cow position: chr14:25695567-25695659 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 1-95
Cow position: chr14:32452437-32452535 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 1-95
Cow position: chr14:41211037-41211135 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 1-96
Cow position: chr14:19513192-19513097 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 86
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-96
Cow position: chr14:23591448-23591541 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 84
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 1-96
Cow position: chr14:23712871-23712966 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 84
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-97
Cow position: chr14:6234082-6233982 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 1-98
Cow position: chr14:23080338-23080240 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 1-98
Cow position: chr14:28795857-28795958 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 1-98
Cow position: chr14:35018571-35018474 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position: chr14:37156053-37156150 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 87
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr14:7270832-7270733 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 11

Conread position: 1-99
Cow position: chr14:11981838-11981936 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr14:16342259-16342158 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 94

Conread position: 1-99
Cow position: chr14:16834519-16834613 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 89
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 1-99
Cow position: chr14:18811938-18811836 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 90
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 1-99
Cow position: chr14:18941119-18941021 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr14:19957726-19957628 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr14:19996503-19996601 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr14:22989216-22989317 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 1-99
Cow position: chr14:24893941-24894043 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-99
Cow position: chr14:27848382-27848483 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 1-99
Cow position: chr14:33247249-33247155 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr14:33326208-33326112 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 1-99
Cow position: chr14:33538741-33538642 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 91
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 1-99
Cow position: chr14:34199660-34199559 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr14:35651021-35650923 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 90
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 94, 73

Conread position: 1-99
Cow position: chr14:36585774-36585676 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr14:38143928-38143831 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 92
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 90, 0

Conread position: 1-99
Cow position: chr14:38296095-38295993 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-99
Cow position: chr14:40034157-40034253 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-99
Cow position: chr14:41479476-41479376 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 1-99
Cow position: chr14:46965743-46965841 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 92
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 91

Conread position: 1-100
Cow position: chr14:24786119-24786216 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 88
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 1-100
Cow position: chr14:35544334-35544231 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 1-101
Cow position: chr14:3878637-3878737 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-101
Cow position: chr14:14466294-14466195 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 1-101
Cow position: chr14:15032940-15033041 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 87, 0

Conread position: 1-101
Cow position: chr14:19624275-19624375 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 94
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 1-101
Cow position: chr14:27312610-27312709 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 1-102
Cow position: chr14:9901355-9901456 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 94
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 1-102
Cow position: chr14:17755742-17755845 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 1-102
Cow position: chr14:22381370-22381269 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-102
Cow position: chr14:25779275-25779380 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 1-102
Cow position: chr14:36554971-36554865 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 1-107
Cow position: chr14:10912788-10912682 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-109
Cow position: chr14:12856781-12856887 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 1-110
Cow position: chr14:39926379-39926484 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 1-112
Cow position: chr14:37883734-37883624 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 1-112
Cow position: chr14:41756445-41756553 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 1-117
Cow position: chr14:4649831-4649716 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 1-131
Cow position: chr14:36437303-36437168 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 1-134
Cow position: chr14:6490519-6490385 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 102

Conread position: 1-134
Cow position: chr14:7317017-7317153 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 106

Conread position: 1-134
Cow position: chr14:20600563-20600698 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 105

Conread position: 1-134
Cow position: chr14:24992002-24992129 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 1-134
Cow position: chr14:35381774-35381905 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 1-134
Cow position: chr14:45068902-45068771 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 1-135
Cow position: chr14:7558247-7558114 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 11, 69

Conread position: 2-99
Cow position: chr14:49021713-49021621 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 2-100
Cow position: chr14:41190690-41190596 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 89
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 2-102
Cow position: chr14:21964306-21964406 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-131
Cow position: chr14:8754512-8754640 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 27

Conread position: 2-131
Cow position: chr14:29300179-29300049 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 3-99
Cow position: chr14:11641386-11641292 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 3-99
Cow position: chr14:14187520-14187616 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 86
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 3-99
Cow position: chr14:39774868-39774772 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 3-102
Cow position: chr14:8964726-8964829 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 3-120
Cow position: chr14:43036066-43036181 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 3-135
Cow position: chr14:21357739-21357870 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 100, 0

Conread position: 4-99
Cow position: chr14:11819936-11819841 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 85
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 4-99
Cow position: chr14:18309122-18309028 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 86
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 87, 0

Conread position: 6-96
Cow position: chr14:19129697-19129791 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 86
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 6-98
Cow position: chr14:10697336-10697244 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 6-99
Cow position: chr14:19593950-19593857 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 82
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 6-99
Cow position: chr14:33209169-33209076 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 84
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 6-103
Cow position: chr14:34096405-34096308 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 6-107
Cow position: chr14:39778943-39779043 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 6-139
Cow position: chr14:22966939-22967075 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 88

Conread position: 7-117
Cow position: chr14:25231458-25231349 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 8-131
Cow position: chr14:25403752-25403628 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 9-98
Cow position: chr14:40284095-40284184 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 9-102
Cow position: chr14:18904415-18904322 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 10-99
Cow position: chr14:13723405-13723316 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 79
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 13-96
Cow position: chr14:16237309-16237224 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 79
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 13-99
Cow position: chr14:18485044-18484958 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position: chr14:24581121-24581206 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 78
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 13-101
Cow position: chr14:106378-106290 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 13-103
Cow position: chr14:28324835-28324925 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 13-125
Cow position: chr14:39770033-39769921 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 78

Conread position: 13-134
Cow position: chr14:11508046-11507926 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 88, 110

Conread position: 14-99
Cow position: chr14:43249783-43249868 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 14-134
Cow position: chr14:13634508-13634388 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 87, 99

Conread position: 17-102
Cow position: chr14:21534839-21534754 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.