Cow genome map

Conread name: Ss1.1-Utr1-UTR010004F02.5

Conread position: 1-93
Cow position: chr15:47843027-47842935 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-94
Cow position: chr15:5234773-5234680 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 83
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-95
Cow position: chr15:18206281-18206187 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 84
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-96
Cow position: chr15:6905768-6905867 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-96
Cow position: chr15:22168289-22168384 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 83
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-97
Cow position: chr15:20459069-20458973 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-97
Cow position: chr15:22751682-22751778 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-97
Cow position: chr15:38394651-38394747 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position: chr15:4501210-4501308 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 1-98
Cow position: chr15:6462271-6462174 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position: chr15:9267832-9267736 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 1-98
Cow position: chr15:11658338-11658237 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 1-98
Cow position: chr15:12259561-12259657 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 1-98
Cow position: chr15:20534219-20534121 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 1-98
Cow position: chr15:26896484-26896384 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 22, 94

Conread position: 1-98
Cow position: chr15:36787535-36787636 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 91
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 1-98
Cow position: chr15:38935930-38936026 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 1-98
Cow position: chr15:40009419-40009322 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position: chr15:41583141-41583238 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 87
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position: chr15:41619956-41619858 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 88
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 1-99
Cow position: chr15:1297968-1298065 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 90
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 1-99
Cow position: chr15:7430208-7430310 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 1-99
Cow position: chr15:9062367-9062265 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 15, 0

Conread position: 1-99
Cow position: chr15:10245780-10245680 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 93

Conread position: 1-99
Cow position: chr15:12316155-12316253 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr15:14870973-14871076 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr15:16583480-16583383 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 1-99
Cow position: chr15:19403212-19403306 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 88
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 1-99
Cow position: chr15:21421174-21421270 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 88
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 1-99
Cow position: chr15:22532468-22532570 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr15:23703000-23703102 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 1-99
Cow position: chr15:24128880-24128978 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr15:24797582-24797485 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 89
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 46

Conread position: 1-99
Cow position: chr15:27972984-27972886 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 88
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr15:32287526-32287429 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 1-99
Cow position: chr15:36354742-36354845 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr15:39599667-39599769 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr15:39621570-39621667 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 14, 5

Conread position: 1-99
Cow position: chr15:47042410-47042308 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 1-101
Cow position: chr15:241074-241179 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 92
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 1-101
Cow position: chr15:23768032-23767934 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 90
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 1-101
Cow position: chr15:35642251-35642351 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 88
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-101
Cow position: chr15:47274604-47274704 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-102
Cow position: chr15:6046081-6045982 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 90
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 1-102
Cow position: chr15:23332650-23332550 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 91
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 90, 0

Conread position: 1-102
Cow position: chr15:26922750-26922648 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 92
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 92

Conread position: 1-102
Cow position: chr15:36782102-36782000 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 1-105
Cow position: chr15:5930809-5930911 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 92
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 1-113
Cow position: chr15:37381858-37381972 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 106

Conread position: 1-127
Cow position: chr15:26158386-26158256 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 1-132
Cow position: chr15:12837088-12836958 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 112
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 128, 63

Conread position: 1-133
Cow position: chr15:8665351-8665218 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 117, 102

Conread position: 1-133
Cow position: chr15:51427592-51427460 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 128, 102

Conread position: 1-134
Cow position: chr15:33605153-33605284 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 81, 0

Conread position: 2-95
Cow position: chr15:50322827-50322920 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 2-98
Cow position: chr15:2952897-2952802 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 2-98
Cow position: chr15:20486981-20486889 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 2-98
Cow position: chr15:50302415-50302514 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 2-99
Cow position: chr15:6082410-6082313 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 2-99
Cow position: chr15:22136914-22137012 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 88
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 2-99
Cow position: chr15:29810341-29810438 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 2-99
Cow position: chr15:45479238-45479336 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 3-98
Cow position: chr15:29542229-29542325 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 85
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 89

Conread position: 3-99
Cow position: chr15:10283927-10284023 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 3-99
Cow position: chr15:16616431-16616523 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 3-99
Cow position: chr15:21894014-21894111 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 3-99
Cow position: chr15:29792679-29792583 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 85
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 3-99
Cow position: chr15:38883385-38883485 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 3-99
Cow position: chr15:41418588-41418488 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 16, 0

Conread position: 3-99
Cow position: chr15:49738814-49738718 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 85
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 3-101
Cow position: chr15:21803426-21803326 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 89
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 3-102
Cow position: chr15:10450673-10450569 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 3-120
Cow position: chr15:13669670-13669555 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 87, 0

Conread position: 4-98
Cow position: chr15:27281102-27281192 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 85
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 5-99
Cow position: chr15:12063565-12063659 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 5-99
Cow position: chr15:33285116-33285211 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 6-98
Cow position: chr15:22939097-22939005 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 82
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 6-99
Cow position: chr15:13846341-13846248 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 84
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 7-99
Cow position: chr15:4535144-4535236 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 83
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 7-99
Cow position: chr15:9177976-9177883 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 82
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 8-108
Cow position: chr15:25208527-25208426 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 89
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 8-125
Cow position: chr15:22938539-22938422 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 9-94
Cow position: chr15:143992-143907 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 9-94
Cow position: chr15:21832185-21832100 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 9-98
Cow position: chr15:23567886-23567799 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 81
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 9-99
Cow position: chr15:34104507-34104595 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 82
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 11-105
Cow position: chr15:13387324-13387419 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 90, 0

Conread position: 13-98
Cow position: chr15:33662737-33662822 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position: chr15:31857835-31857921 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position: chr15:32979791-32979705 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 78
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position: chr15:39405978-39406063 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 77
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 13-99
Cow position: chr15:45323027-45323112 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 79
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 13-99
Cow position: chr15:47105280-47105365 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 80
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 13-101
Cow position: chr15:25584846-25584758 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 81
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 13-134
Cow position: chr15:20472302-20472183 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 49, 0

Conread position: 15-98
Cow position: chr15:13554586-13554669 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 74
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 19-134
Cow position: chr15:12199777-12199661 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 21-99
Cow position: chr15:10607802-10607724 (view UCSC Genome Browser custom track)
Alignm length: 79
Alignm identity: 72
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.