Cow genome map

Conread name: Ss1.1-Utr1-UTR010004F02.5

Conread position: 1-84
Cow position: chr19:24956595-24956678 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 76
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-84
Cow position: chr19:29625753-29625668 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 1-88
Cow position: chr19:6531738-6531651 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 78
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr19:20622505-20622418 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr19:21335765-21335856 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 82
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-88
Cow position: chr19:27104593-27104506 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-94
Cow position: chr19:41817748-41817841 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 43, 23

Conread position: 1-95
Cow position: chr19:41584822-41584728 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-95
Cow position: chr19:55247473-55247379 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 86
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-97
Cow position: chr19:5433715-5433810 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 1-97
Cow position: chr19:6688154-6688254 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-97
Cow position: chr19:11817083-11817178 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 89
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 90, 0

Conread position: 1-98
Cow position: chr19:7473545-7473449 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 86
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 1-98
Cow position: chr19:21042967-21042867 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 92
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 1-98
Cow position: chr19:22765468-22765367 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 89
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 1-98
Cow position: chr19:32450929-32450828 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-98
Cow position: chr19:38637953-38638051 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 1-98
Cow position: chr19:42694837-42694738 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 1-98
Cow position: chr19:43178428-43178527 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 1-99
Cow position: chr19:2138258-2138356 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr19:2207925-2208026 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 94

Conread position: 1-99
Cow position: chr19:2577424-2577325 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 62

Conread position: 1-99
Cow position: chr19:9294116-9294019 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 1-99
Cow position: chr19:10080916-10080818 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr19:20310783-20310881 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr19:20671050-20671152 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr19:21115154-21115056 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr19:23786040-23785937 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 89
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr19:27612321-27612418 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 1-99
Cow position: chr19:28451253-28451154 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 1-99
Cow position: chr19:32457491-32457391 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 92
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 1-99
Cow position: chr19:33468871-33468773 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 89
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr19:33932296-33932392 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 88
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 5, 0

Conread position: 1-99
Cow position: chr19:36845094-36844998 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 88
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 1-99
Cow position: chr19:43431475-43431572 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 1-99
Cow position: chr19:46454701-46454600 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 93
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 75

Conread position: 1-99
Cow position: chr19:46822285-46822188 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 1-99
Cow position: chr19:46918693-46918590 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 92
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr19:52214935-52214837 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr19:52381377-52381281 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 90
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 1-99
Cow position: chr19:53372049-53372147 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-101
Cow position: chr19:419721-419624 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 1-101
Cow position: chr19:10171848-10171747 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 1-101
Cow position: chr19:33882313-33882410 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 1-102
Cow position: chr19:23832722-23832822 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 1-102
Cow position: chr19:39751332-39751227 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 92
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 1-103
Cow position: chr19:1968457-1968560 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 1-103
Cow position: chr19:9583162-9583059 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 91
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 100, 0

Conread position: 1-103
Cow position: chr19:25727031-25727133 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 63

Conread position: 1-103
Cow position: chr19:31846694-31846798 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 91
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 60

Conread position: 1-103
Cow position: chr19:36059783-36059676 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 96
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 1-111
Cow position: chr19:46159904-46159794 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 106, 102

Conread position: 1-116
Cow position: chr19:44125493-44125381 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 1-122
Cow position: chr19:51185274-51185155 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 103

Conread position: 1-128
Cow position: chr19:29627532-29627653 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 100, 22

Conread position: 1-134
Cow position: chr19:2154224-2154360 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 18, 106

Conread position: 1-134
Cow position: chr19:35742009-35741872 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 107

Conread position: 1-134
Cow position: chr19:42240444-42240576 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 1-134
Cow position: chr19:48722876-48722737 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 1-204
Cow position: chr19:4537570-4537764 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 196, 27

Conread position: 2-95
Cow position: chr19:14347858-14347765 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 82
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 2-95
Cow position: chr19:43058382-43058288 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 82
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 2-95
Cow position: chr19:46180968-46181061 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 84
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 2-99
Cow position: chr19:20693343-20693248 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 2-99
Cow position: chr19:24144867-24144767 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 93

Conread position: 2-99
Cow position: chr19:36176595-36176495 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 93

Conread position: 2-99
Cow position: chr19:43418264-43418170 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 85
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 2-102
Cow position: chr19:11376559-11376659 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-109
Cow position: chr19:16694198-16694307 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 93

Conread position: 2-111
Cow position: chr19:13390762-13390656 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 95
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 99, 23

Conread position: 2-134
Cow position: chr19:31595145-31595014 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 101, 0

Conread position: 3-93
Cow position: chr19:990564-990656 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 3-99
Cow position: chr19:25041482-25041578 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 87
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 3-99
Cow position: chr19:33306945-33306846 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 92

Conread position: 3-99
Cow position: chr19:47118650-47118749 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 92

Conread position: 3-131
Cow position: chr19:30925473-30925599 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 3-134
Cow position: chr19:23304651-23304779 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 4-101
Cow position: chr19:19173963-19173865 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 4-101
Cow position: chr19:43441011-43440910 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 5-99
Cow position: chr19:4445777-4445871 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 6-98
Cow position: chr19:386986-386895 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 83
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 82, 0

Conread position: 6-99
Cow position: chr19:5913108-5913201 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 83
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 6-99
Cow position: chr19:35540148-35540053 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 84
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 7-99
Cow position: chr19:15863197-15863289 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 82
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 7-99
Cow position: chr19:27348421-27348512 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 82
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 7-101
Cow position: chr19:33235910-33236004 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 82
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 7-134
Cow position: chr19:6516101-6515976 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 8-95
Cow position: chr19:47187212-47187299 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 79
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 8-134
Cow position: chr19:12036664-12036789 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 95

Conread position: 9-99
Cow position: chr19:10213509-10213420 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 9-99
Cow position: chr19:15437948-15437858 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 81
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 9-107
Cow position: chr19:37633513-37633610 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 11-99
Cow position: chr19:53800116-53800204 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 79
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-96
Cow position: chr19:8212002-8212085 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 80
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position: chr19:1355448-1355362 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position: chr19:33912798-33912884 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position: chr19:39661709-39661795 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 79
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 13-101
Cow position: chr19:20432943-20433031 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 82
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 13-101
Cow position: chr19:39254664-39254752 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 79
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-134
Cow position: chr19:4340072-4340192 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 15-103
Cow position: chr19:25902173-25902083 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 83
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 78

Conread position: 19-99
Cow position: chr19:13755719-13755640 (view UCSC Genome Browser custom track)
Alignm length: 81
Alignm identity: 74
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 72, 0

Show alignments to all cow chromosomes.