Cow genome map

Conread name: Ss1.1-Utr1-UTR010004F02.5

Conread position: 1-88
Cow position: chr20:17904061-17903974 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 78
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-92
Cow position: chr20:17251610-17251518 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 47

Conread position: 1-93
Cow position: chr20:40127436-40127527 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 1-94
Cow position: chr20:26680025-26679931 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 84
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 80

Conread position: 1-95
Cow position: chr20:12839958-12839862 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1-96
Cow position: chr20:9537035-9536941 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 1-96
Cow position: chr20:14759759-14759858 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 1-96
Cow position: chr20:19313160-19313259 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 1-96
Cow position: chr20:19410463-19410562 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 37, 94

Conread position: 1-97
Cow position: chr20:23850185-23850089 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 88
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-97
Cow position: chr20:27339966-27339872 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 87
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 1-97
Cow position: chr20:28067525-28067620 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 86
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 1-97
Cow position: chr20:38768555-38768648 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 1-98
Cow position: chr20:4781467-4781365 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 1-98
Cow position: chr20:12784098-12784001 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position: chr20:14572455-14572552 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 89
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position: chr20:22445734-22445830 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 1-98
Cow position: chr20:23064928-23065028 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 88
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 80, 0

Conread position: 1-98
Cow position: chr20:33435262-33435365 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 1-98
Cow position: chr20:35958546-35958449 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 85
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr20:382226-382324 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr20:4892995-4893094 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 1-99
Cow position: chr20:6848522-6848425 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 1-99
Cow position: chr20:8556369-8556471 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr20:12155201-12155296 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 88
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 1-99
Cow position: chr20:12420717-12420818 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 1-99
Cow position: chr20:13023577-13023675 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 89
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr20:13267528-13267630 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 1-99
Cow position: chr20:13752141-13752044 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 1-99
Cow position: chr20:14735577-14735480 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 1-99
Cow position: chr20:14740193-14740294 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 89
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 18, 94

Conread position: 1-99
Cow position: chr20:16715301-16715203 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr20:18618537-18618442 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr20:20201887-20201795 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 1-99
Cow position: chr20:22235216-22235117 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 89
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 1-99
Cow position: chr20:24521652-24521554 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 91
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr20:29844956-29844858 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 89
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr20:30817436-30817340 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 1-99
Cow position: chr20:32847257-32847155 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 89
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr20:33144654-33144752 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr20:33177087-33176985 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 1-99
Cow position: chr20:34001495-34001593 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr20:34251782-34251875 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 1-99
Cow position: chr20:39019596-39019499 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 1-99
Cow position: chr20:40511857-40511954 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 1-101
Cow position: chr20:15822217-15822118 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 88
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 1-101
Cow position: chr20:16291375-16291272 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 91
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 1-101
Cow position: chr20:40423189-40423289 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 89
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-102
Cow position: chr20:15593197-15593096 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-102
Cow position: chr20:27314585-27314482 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 74

Conread position: 1-105
Cow position: chr20:5025401-5025504 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 91
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 1-107
Cow position: chr20:14620371-14620477 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 91

Conread position: 1-107
Cow position: chr20:22313257-22313364 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 96, 52

Conread position: 1-112
Cow position: chr20:34777085-34776977 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 1-118
Cow position: chr20:9379310-9379194 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 102, 0

Conread position: 1-129
Cow position: chr20:3599489-3599616 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 1-131
Cow position: chr20:12996107-12996239 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 1-131
Cow position: chr20:13967359-13967488 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 100, 18

Conread position: 1-134
Cow position: chr20:9014443-9014579 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 15, 106

Conread position: 1-134
Cow position: chr20:18399661-18399530 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 1-134
Cow position: chr20:20203117-20202985 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 1-134
Cow position: chr20:32636666-32636796 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-134
Cow position: chr20:33169974-33170105 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 1-137
Cow position: chr20:41174398-41174263 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 6, 103

Conread position: 1-171
Cow position: chr20:5826842-5826676 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 106

Conread position: 2-95
Cow position: chr20:6602940-6602848 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 2-99
Cow position: chr20:4621440-4621536 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 86
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 2-99
Cow position: chr20:7756729-7756826 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-99
Cow position: chr20:33363418-33363323 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 85
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 2-101
Cow position: chr20:22029838-22029739 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 2-112
Cow position: chr20:22959442-22959550 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 3-87
Cow position: chr20:7550140-7550056 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 77
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 3-96
Cow position: chr20:23679247-23679340 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 83
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 3-99
Cow position: chr20:35907148-35907243 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 3-102
Cow position: chr20:7659316-7659413 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 4-88
Cow position: chr20:38578859-38578943 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 75
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 4-98
Cow position: chr20:26469167-26469261 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 83
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 4-98
Cow position: chr20:39376081-39375987 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 4-98
Cow position: chr20:39377247-39377341 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 4-101
Cow position: chr20:15582138-15582235 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 6-99
Cow position: chr20:1139877-1139970 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 83
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 6-99
Cow position: chr20:20739393-20739486 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 82
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 6-102
Cow position: chr20:20899130-20899036 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 6-111
Cow position: chr20:4945350-4945455 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 93, 26

Conread position: 7-99
Cow position: chr20:39728343-39728252 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 7-103
Cow position: chr20:35009846-35009942 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 7-127
Cow position: chr20:14806781-14806662 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 8-104
Cow position: chr20:21345299-21345204 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 9-99
Cow position: chr20:4205854-4205766 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 81
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 13-97
Cow position: chr20:23846783-23846867 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 76
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 13-98
Cow position: chr20:16941434-16941519 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position: chr20:23505717-23505632 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 77
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 0

Show alignments to all cow chromosomes.