Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010004F02.5 |
| Conread position: | 1-85 |
| Cow position: | chr23:5723403-5723319 (view UCSC Genome Browser custom track) |
| Alignm length: | 85 |
| Alignm identity: | 75 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-91 |
| Cow position: | chr23:1923976-1924066 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 80 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-94 |
| Cow position: | chr23:26632663-26632566 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-94 |
| Cow position: | chr23:35366238-35366332 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-94 |
| Cow position: | chr23:35369150-35369244 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-94 |
| Cow position: | chr23:39775590-39775498 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-95 |
| Cow position: | chr23:29742249-29742151 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-96 |
| Cow position: | chr23:12050225-12050130 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-97 |
| Cow position: | chr23:18322556-18322655 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 94 |
| Conread position: | 1-98 |
| Cow position: | chr23:7175480-7175383 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | chr23:7402562-7402469 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-98 |
| Cow position: | chr23:7845153-7845052 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-98 |
| Cow position: | chr23:16700182-16700276 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-98 |
| Cow position: | chr23:27563849-27563946 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | chr23:39302579-39302478 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:344314-344416 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:1429934-1430033 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:1878011-1878109 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:1883253-1883155 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:4608520-4608620 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:8917989-8918091 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:9235206-9235301 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:9268453-9268352 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 1-99 |
| Cow position: | chr23:14164541-14164638 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:14895940-14896041 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 1-99 |
| Cow position: | chr23:16583050-16583147 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:18367555-18367457 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:22574200-22574299 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:22804584-22804484 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 1-99 |
| Cow position: | chr23:26795040-26795142 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:28053136-28053039 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:36199157-36199055 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-99 |
| Cow position: | chr23:38208573-38208473 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 1-101 |
| Cow position: | chr23:769726-769830 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-101 |
| Cow position: | chr23:11209873-11209769 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-101 |
| Cow position: | chr23:28118241-28118341 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 1-102 |
| Cow position: | chr23:534089-533989 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-102 |
| Cow position: | chr23:2802427-2802527 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-102 |
| Cow position: | chr23:21343387-21343491 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-102 |
| Cow position: | chr23:30662764-30662869 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-119 |
| Cow position: | chr23:3208759-3208874 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-120 |
| Cow position: | chr23:10554148-10554269 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 89 |
| Conread position: | 1-120 |
| Cow position: | chr23:28206470-28206353 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1-123 |
| Cow position: | chr23:9599361-9599240 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-127 |
| Cow position: | chr23:27862191-27862069 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-127 |
| Cow position: | chr23:37065701-37065572 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 1-133 |
| Cow position: | chr23:5744961-5744827 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 1-134 |
| Cow position: | chr23:9594970-9595101 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 96, 61 |
| Conread position: | 2-93 |
| Cow position: | chr23:10876287-10876197 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 2-95 |
| Cow position: | chr23:37992847-37992755 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 81 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 2-99 |
| Cow position: | chr23:33695912-33696013 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-102 |
| Cow position: | chr23:21336633-21336730 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-102 |
| Cow position: | chr23:33601669-33601765 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-127 |
| Cow position: | chr23:39309256-39309380 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 3-99 |
| Cow position: | chr23:11129092-11128996 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-133 |
| Cow position: | chr23:5617434-5617309 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 4-99 |
| Cow position: | chr23:15056785-15056879 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 5-98 |
| Cow position: | chr23:8006096-8006003 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-98 |
| Cow position: | chr23:27544687-27544595 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-99 |
| Cow position: | chr23:1991572-1991665 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-99 |
| Cow position: | chr23:14739307-14739212 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 6-99 |
| Cow position: | chr23:39806728-39806635 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 6-134 |
| Cow position: | chr23:7937685-7937811 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 6-134 |
| Cow position: | chr23:13674063-13674186 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 7-95 |
| Cow position: | chr23:6367459-6367371 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 79 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-98 |
| Cow position: | chr23:40781180-40781089 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-99 |
| Cow position: | chr23:26003918-26003826 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-99 |
| Cow position: | chr23:40778116-40778025 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 7-108 |
| Cow position: | chr23:7596476-7596578 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 7-128 |
| Cow position: | chr23:13599195-13599075 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 84 |
| Conread position: | 9-134 |
| Cow position: | chr23:25669218-25669342 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 10-128 |
| Cow position: | chr23:2055551-2055434 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 11-99 |
| Cow position: | chr23:16073080-16072992 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-97 |
| Cow position: | chr23:11045331-11045248 (view UCSC Genome Browser custom track) |
| Alignm length: | 85 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 13-98 |
| Cow position: | chr23:20057019-20057104 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 75 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-101 |
| Cow position: | chr23:1610699-1610612 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 78 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 13-103 |
| Cow position: | chr23:6767738-6767649 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 79 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 15-99 |
| Cow position: | chr23:11315171-11315255 (view UCSC Genome Browser custom track) |
| Alignm length: | 85 |
| Alignm identity: | 75 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.