Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010004F02.5 |
| Conread position: | 1-89 |
| Cow position: | chr24:41068103-41068014 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 78 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-93 |
| Cow position: | chr24:29606233-29606325 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-95 |
| Cow position: | chr24:11886995-11886897 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-95 |
| Cow position: | chr24:19736540-19736634 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-96 |
| Cow position: | chr24:33238714-33238809 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-96 |
| Cow position: | chr24:39440723-39440818 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | chr24:2730736-2730833 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | chr24:3165655-3165558 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | chr24:6900658-6900561 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | chr24:34564964-34564865 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 1-99 |
| Cow position: | chr24:19389-19485 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:11876719-11876619 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:15246801-15246900 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:15508699-15508798 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 1-99 |
| Cow position: | chr24:20024445-20024343 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:27341186-27341288 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:28062786-28062681 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:30314198-30314300 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:33098658-33098752 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:33944238-33944143 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:36710975-36710876 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-99 |
| Cow position: | chr24:38375119-38375021 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 86 |
| Conread position: | 1-100 |
| Cow position: | chr24:20988168-20988265 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-101 |
| Cow position: | chr24:1269637-1269538 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-101 |
| Cow position: | chr24:15861767-15861867 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-101 |
| Cow position: | chr24:25424901-25424797 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-102 |
| Cow position: | chr24:29389077-29388979 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 1-104 |
| Cow position: | chr24:25950832-25950936 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-107 |
| Cow position: | chr24:11840012-11839908 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-108 |
| Cow position: | chr24:5652143-5652249 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-112 |
| Cow position: | chr24:31816423-31816309 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 1-122 |
| Cow position: | chr24:28289595-28289715 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 1-130 |
| Cow position: | chr24:15666572-15666703 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 1-133 |
| Cow position: | chr24:27874438-27874305 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 104 |
| Conread position: | 1-134 |
| Cow position: | chr24:16625667-16625799 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 99, 115 |
| Conread position: | 1-134 |
| Cow position: | chr24:19466096-19466231 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 1-134 |
| Cow position: | chr24:27290707-27290579 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-134 |
| Cow position: | chr24:29673353-29673221 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-134 |
| Cow position: | chr24:30178069-30177938 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-134 |
| Cow position: | chr24:34532961-34532825 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 1-134 |
| Cow position: | chr24:42007578-42007448 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1-134 |
| Cow position: | chr24:44054308-44054440 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-135 |
| Cow position: | chr24:17294353-17294486 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-136 |
| Cow position: | chr24:19804525-19804387 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 1-269 |
| Cow position: | chr24:18390455-18390726 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 127, 85 |
| Conread position: | 2-99 |
| Cow position: | chr24:29170798-29170701 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-99 |
| Cow position: | chr24:33153615-33153518 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-99 |
| Cow position: | chr24:40300987-40300891 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 5 |
| Conread position: | 2-134 |
| Cow position: | chr24:29781992-29781864 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 2-134 |
| Cow position: | chr24:43364192-43364066 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-97 |
| Cow position: | chr24:36554998-36555090 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 3-99 |
| Cow position: | chr24:6677333-6677238 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 3-99 |
| Cow position: | chr24:23616526-23616431 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-99 |
| Cow position: | chr24:35073924-35073828 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-103 |
| Cow position: | chr24:27052663-27052761 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 3-109 |
| Cow position: | chr24:18741739-18741844 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 3-120 |
| Cow position: | chr24:28689543-28689426 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 101 |
| Conread position: | 3-134 |
| Cow position: | chr24:814433-814563 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 3-134 |
| Cow position: | chr24:5754670-5754543 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 4-99 |
| Cow position: | chr24:30545025-30545120 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-134 |
| Cow position: | chr24:32370078-32370209 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 101 |
| Conread position: | 6-98 |
| Cow position: | chr24:27844691-27844783 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-99 |
| Cow position: | chr24:43200444-43200538 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 6-103 |
| Cow position: | chr24:28303520-28303617 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 82 |
| Conread position: | 9-94 |
| Cow position: | chr24:32054498-32054413 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 77 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-95 |
| Cow position: | chr24:27906256-27906174 (view UCSC Genome Browser custom track) |
| Alignm length: | 83 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-99 |
| Cow position: | chr24:5152055-5151971 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 78 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 13-99 |
| Cow position: | chr24:15288679-15288593 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-99 |
| Cow position: | chr24:17311387-17311473 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-99 |
| Cow position: | chr24:39483295-39483209 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-134 |
| Cow position: | chr24:38655270-38655390 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
Show alignments to all cow chromosomes.