Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010004F02.5 |
| Conread position: | 1-88 |
| Cow position: | |
| Alignm length: | 88 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-89 |
| Cow position: | |
| Alignm length: | 89 |
| Alignm identity: | 80 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-93 |
| Cow position: | |
| Alignm length: | 93 |
| Alignm identity: | 79 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-93 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-95 |
| Cow position: | |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-95 |
| Cow position: | |
| Alignm length: | 95 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-96 |
| Cow position: | |
| Alignm length: | 96 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-96 |
| Cow position: | |
| Alignm length: | 96 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-97 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-98 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 104 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-99 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-101 |
| Cow position: | |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-101 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-101 |
| Cow position: | |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-102 |
| Cow position: | |
| Alignm length: | 106 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-102 |
| Cow position: | |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-102 |
| Cow position: | |
| Alignm length: | 102 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-107 |
| Cow position: | |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 1-107 |
| Cow position: | |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 1-120 |
| Cow position: | |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 106 |
| Conread position: | 1-125 |
| Cow position: | |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 1-130 |
| Cow position: | |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-133 |
| Cow position: | |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 131 |
| Conread position: | 1-134 |
| Cow position: | |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 1-134 |
| Cow position: | |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-134 |
| Cow position: | |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 1-134 |
| Cow position: | |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 77 |
| Conread position: | 1-134 |
| Cow position: | |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 2-98 |
| Cow position: | |
| Alignm length: | 97 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-98 |
| Cow position: | |
| Alignm length: | 97 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-99 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-99 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 3-99 |
| Cow position: | |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-99 |
| Cow position: | |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-107 |
| Cow position: | |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-134 |
| Cow position: | |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-99 |
| Cow position: | |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-99 |
| Cow position: | |
| Alignm length: | 94 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-85 |
| Cow position: | |
| Alignm length: | 79 |
| Alignm identity: | 73 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-107 |
| Cow position: | |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 8-110 |
| Cow position: | |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 9-99 |
| Cow position: | |
| Alignm length: | 91 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-99 |
| Cow position: | |
| Alignm length: | 87 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-99 |
| Cow position: | |
| Alignm length: | 87 |
| Alignm identity: | 79 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-99 |
| Cow position: | |
| Alignm length: | 87 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-99 |
| Cow position: | |
| Alignm length: | 87 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-102 |
| Cow position: | |
| Alignm length: | 90 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.