Cow genome map

Conread name: Ss1.1-Utr1-UTR010004F02.5

Conread position: 1-88
Cow position: chr28:5204063-5203976 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 80
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-89
Cow position: chr28:8628913-8629001 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 82
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-89
Cow position: chr28:18717258-18717347 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 81
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 1-93
Cow position: chr28:11827357-11827266 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 1-94
Cow position: chr28:31648937-31648844 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-95
Cow position: chr28:1537574-1537476 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 1-95
Cow position: chr28:9099803-9099704 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 87
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-95
Cow position: chr28:13267649-13267552 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 23, 93

Conread position: 1-95
Cow position: chr28:23460012-23459914 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 1-96
Cow position: chr28:3480133-3480038 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 83
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-96
Cow position: chr28:5144658-5144754 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 1-96
Cow position: chr28:7389191-7389095 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 65

Conread position: 1-96
Cow position: chr28:12430471-12430378 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 1-97
Cow position: chr28:7590318-7590414 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position: chr28:2862729-2862628 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-98
Cow position: chr28:16204465-16204567 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 1-98
Cow position: chr28:19222734-19222830 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 86
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 1-98
Cow position: chr28:23775913-23775812 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 1-99
Cow position: chr28:2905444-2905346 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 89
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr28:3024048-3024146 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr28:3144028-3144124 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 90
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 90, 0

Conread position: 1-99
Cow position: chr28:4914234-4914336 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 1-99
Cow position: chr28:5773503-5773408 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 1-99
Cow position: chr28:7328767-7328668 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 1-99
Cow position: chr28:7372387-7372485 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 87
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 11, 71

Conread position: 1-99
Cow position: chr28:10456658-10456756 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr28:20124647-20124551 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 1-99
Cow position: chr28:22132788-22132692 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 1-99
Cow position: chr28:23253933-23254033 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 58

Conread position: 1-99
Cow position: chr28:23793439-23793535 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 1-99
Cow position: chr28:25498636-25498738 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 90
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 1-99
Cow position: chr28:26103579-26103481 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position: chr28:28766042-28766144 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-99
Cow position: chr28:34230097-34229995 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 1-100
Cow position: chr28:11884656-11884758 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 41

Conread position: 1-101
Cow position: chr28:9390499-9390601 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 1-101
Cow position: chr28:10977730-10977628 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 1-101
Cow position: chr28:20760056-20760160 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 1-101
Cow position: chr28:22321289-22321186 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 94

Conread position: 1-102
Cow position: chr28:7698117-7698219 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 40

Conread position: 1-102
Cow position: chr28:16246407-16246505 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 1-105
Cow position: chr28:21502258-21502156 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 92
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 1-105
Cow position: chr28:23676004-23675905 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 92
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 1-109
Cow position: chr28:10888531-10888420 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 18, 106

Conread position: 1-110
Cow position: chr28:26922501-26922608 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 1-120
Cow position: chr28:23621411-23621294 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 1-124
Cow position: chr28:2819624-2819500 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 104

Conread position: 1-125
Cow position: chr28:8681984-8682110 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 22, 41

Conread position: 1-131
Cow position: chr28:10296057-10295922 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 1-134
Cow position: chr28:5837977-5837844 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 22, 103

Conread position: 1-134
Cow position: chr28:13356726-13356853 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 1-134
Cow position: chr28:14151098-14150966 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 1-134
Cow position: chr28:15272397-15272529 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 1-134
Cow position: chr28:16879410-16879536 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 1-134
Cow position: chr28:22170854-22170988 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 100, 0

Conread position: 1-135
Cow position: chr28:3914573-3914441 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 1-135
Cow position: chr28:26743485-26743353 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 1-135
Cow position: chr28:26784603-26784735 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 102, 0

Conread position: 1-135
Cow position: chr28:32813136-32813270 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 100, 59

Conread position: 2-93
Cow position: chr28:14234835-14234744 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 80
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 2-99
Cow position: chr28:7547484-7547581 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 88
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 2-101
Cow position: chr28:2898858-2898759 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 2-102
Cow position: chr28:19394493-19394392 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 90
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 89, 0

Conread position: 3-98
Cow position: chr28:34844388-34844483 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 85
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 3-134
Cow position: chr28:4282626-4282760 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 13, 104

Conread position: 4-99
Cow position: chr28:25128124-25128217 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 84
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 4-102
Cow position: chr28:17288086-17287987 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 88
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 5-99
Cow position: chr28:16925351-16925445 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 90
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 6-92
Cow position: chr28:16252999-16253085 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 79
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 6-95
Cow position: chr28:1099783-1099872 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 83
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 6-95
Cow position: chr28:5771228-5771140 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 6-99
Cow position: chr28:16109803-16109710 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 6-103
Cow position: chr28:13241965-13242063 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 6-134
Cow position: chr28:5817705-5817579 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 101, 66

Conread position: 7-99
Cow position: chr28:8348795-8348887 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 7-99
Cow position: chr28:21844813-21844722 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 7-100
Cow position: chr28:3077850-3077758 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 85
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 7-100
Cow position: chr28:3078820-3078913 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 84
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 7-116
Cow position: chr28:16346669-16346777 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 7-134
Cow position: chr28:11585347-11585476 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 99

Conread position: 7-147
Cow position: chr28:25596490-25596352 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 9-99
Cow position: chr28:33051878-33051786 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 9-113
Cow position: chr28:9285522-9285627 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 93
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 99, 0

Conread position: 13-98
Cow position: chr28:8372322-8372237 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 81
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position: chr28:12619414-12619328 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-101
Cow position: chr28:7751449-7751537 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 79
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-102
Cow position: chr28:24646392-24646303 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 81
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 13-108
Cow position: chr28:3427012-3427107 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 24-112
Cow position: chr28:23840049-23839963 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 81
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 67, 0

Show alignments to all cow chromosomes.