Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010004F02.5 |
| Conread position: | 1-88 |
| Cow position: | chr29:94692-94779 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr29:2984741-2984654 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-96 |
| Cow position: | chr29:1933700-1933795 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-97 |
| Cow position: | chr29:2744415-2744511 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-97 |
| Cow position: | chr29:13458915-13458820 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-98 |
| Cow position: | chr29:9638456-9638552 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-98 |
| Cow position: | chr29:34297708-34297805 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-98 |
| Cow position: | chr29:37599348-37599444 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:585138-585041 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:8164000-8164104 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:10296583-10296681 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:11562475-11562373 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:13615787-13615884 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:19338840-19338738 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:21443487-21443585 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:25088610-25088512 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:25737561-25737658 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 1-99 |
| Cow position: | chr29:35501794-35501889 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:35636283-35636183 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 1-99 |
| Cow position: | chr29:36530724-36530622 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-99 |
| Cow position: | chr29:45588616-45588714 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-101 |
| Cow position: | chr29:13553991-13553889 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-101 |
| Cow position: | chr29:36216974-36216875 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-102 |
| Cow position: | chr29:6014958-6014859 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-102 |
| Cow position: | chr29:11915677-11915572 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-102 |
| Cow position: | chr29:40902863-40902963 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-103 |
| Cow position: | chr29:4625139-4625239 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 1-105 |
| Cow position: | chr29:20178264-20178371 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 85 |
| Conread position: | 1-105 |
| Cow position: | chr29:25474768-25474660 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-107 |
| Cow position: | chr29:21236974-21236868 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 1-108 |
| Cow position: | chr29:9686145-9686251 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-110 |
| Cow position: | chr29:2071713-2071822 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 1-110 |
| Cow position: | chr29:35738409-35738521 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 1-112 |
| Cow position: | chr29:41530706-41530597 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-115 |
| Cow position: | chr29:16735145-16735263 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-117 |
| Cow position: | chr29:707093-707204 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 1-120 |
| Cow position: | chr29:34744760-34744877 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 1-120 |
| Cow position: | chr29:40166102-40165981 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 1-127 |
| Cow position: | chr29:5919464-5919594 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 1-133 |
| Cow position: | chr29:40891841-40891975 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 107 |
| Conread position: | 1-134 |
| Cow position: | chr29:686335-686466 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-134 |
| Cow position: | chr29:6635957-6635829 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-134 |
| Cow position: | chr29:18878644-18878776 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-134 |
| Cow position: | chr29:26734888-26734758 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-134 |
| Cow position: | chr29:29066283-29066151 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 2-88 |
| Cow position: | chr29:39643031-39642946 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 80 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 2-99 |
| Cow position: | chr29:31928837-31928738 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 3-95 |
| Cow position: | chr29:4520190-4520098 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-95 |
| Cow position: | chr29:22162398-22162488 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-99 |
| Cow position: | chr29:36356704-36356610 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 83 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-102 |
| Cow position: | chr29:17131752-17131855 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 3-127 |
| Cow position: | chr29:4120698-4120578 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 4-98 |
| Cow position: | chr29:109563-109470 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 4-98 |
| Cow position: | chr29:26615868-26615965 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 6-94 |
| Cow position: | chr29:36183125-36183039 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 79 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 6-102 |
| Cow position: | chr29:26263702-26263607 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-102 |
| Cow position: | chr29:41747292-41747196 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-109 |
| Cow position: | chr29:24119885-24119989 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 6-134 |
| Cow position: | chr29:4328284-4328159 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 7-97 |
| Cow position: | chr29:22720977-22720889 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 80 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 7-99 |
| Cow position: | chr29:356177-356085 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-99 |
| Cow position: | chr29:9139259-9139167 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-99 |
| Cow position: | chr29:21665821-21665729 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 79 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-99 |
| Cow position: | chr29:39567538-39567447 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 7-100 |
| Cow position: | chr29:24103698-24103791 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-102 |
| Cow position: | chr29:18212131-18212226 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 7-137 |
| Cow position: | chr29:2263175-2263305 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 122, 96 |
| Conread position: | 9-102 |
| Cow position: | chr29:17409179-17409085 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 11-99 |
| Cow position: | chr29:26778731-26778643 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 79 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-98 |
| Cow position: | chr29:20933550-20933465 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 76 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-110 |
| Cow position: | chr29:18735798-18735894 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 13-134 |
| Cow position: | chr29:26130628-26130508 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 15-98 |
| Cow position: | chr29:28775612-28775694 (view UCSC Genome Browser custom track) |
| Alignm length: | 84 |
| Alignm identity: | 75 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 20-99 |
| Cow position: | chr29:43516843-43516922 (view UCSC Genome Browser custom track) |
| Alignm length: | 80 |
| Alignm identity: | 74 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.