Cow genome map

Conread name: Ss1.1-Utr1-UTR010004F02.5

Conread position: 1-88
Cow position:
Alignm length: 88
Alignm identity: 78
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 1-89
Cow position:
Alignm length: 89
Alignm identity: 78
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-90
Cow position:
Alignm length: 90
Alignm identity: 83
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-92
Cow position:
Alignm length: 92
Alignm identity: 81
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-94
Cow position:
Alignm length: 98
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-95
Cow position:
Alignm length: 100
Alignm identity: 88
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 1-95
Cow position:
Alignm length: 95
Alignm identity: 83
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 1-96
Cow position:
Alignm length: 96
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 1-97
Cow position:
Alignm length: 97
Alignm identity: 86
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position:
Alignm length: 98
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-98
Cow position:
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position:
Alignm length: 98
Alignm identity: 85
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 1-98
Cow position:
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position:
Alignm length: 102
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 12, 67

Conread position: 1-98
Cow position:
Alignm length: 98
Alignm identity: 84
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position:
Alignm length: 98
Alignm identity: 86
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 1-98
Cow position:
Alignm length: 98
Alignm identity: 89
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position:
Alignm length: 102
Alignm identity: 88
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 1-98
Cow position:
Alignm length: 98
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-98
Cow position:
Alignm length: 102
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-98
Cow position:
Alignm length: 98
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 88
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 90
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 104
Alignm identity: 89
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 1-99
Cow position:
Alignm length: 103
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 94

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 85
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 88
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 85
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 1-99
Cow position:
Alignm length: 100
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 22

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 87
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 1-99
Cow position:
Alignm length: 100
Alignm identity: 85
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 1-99
Cow position:
Alignm length: 103
Alignm identity: 89
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 1-99
Cow position:
Alignm length: 103
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 94

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 88
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 84
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 86
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 84
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 104
Alignm identity: 91
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 86
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 85
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 82
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 103
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-99
Cow position:
Alignm length: 101
Alignm identity: 88
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 85
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 103
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 88
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 91
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 1-99
Cow position:
Alignm length: 100
Alignm identity: 85
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 1-99
Cow position:
Alignm length: 103
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 1-99
Cow position:
Alignm length: 103
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 86

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 88
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 103
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 1-99
Cow position:
Alignm length: 99
Alignm identity: 87
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-99
Cow position:
Alignm length: 103
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 1-101
Cow position:
Alignm length: 101
Alignm identity: 88
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-101
Cow position:
Alignm length: 101
Alignm identity: 85
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 1-101
Cow position:
Alignm length: 101
Alignm identity: 89
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 1-101
Cow position:
Alignm length: 101
Alignm identity: 87
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 1-101
Cow position:
Alignm length: 101
Alignm identity: 87
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 1-101
Cow position:
Alignm length: 103
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 16, 63

Conread position: 1-102
Cow position:
Alignm length: 102
Alignm identity: 87
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 1-102
Cow position:
Alignm length: 106
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 83

Conread position: 1-103
Cow position:
Alignm length: 104
Alignm identity: 93
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 100, 25

Conread position: 1-103
Cow position:
Alignm length: 103
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 1-107
Cow position:
Alignm length: 107
Alignm identity: 88
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 1-107
Cow position:
Alignm length: 107
Alignm identity: 90
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-109
Cow position:
Alignm length: 109
Alignm identity: 95
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 90, 0

Conread position: 1-112
Cow position:
Alignm length: 116
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 26, 106

Conread position: 1-112
Cow position:
Alignm length: 113
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 1-112
Cow position:
Alignm length: 112
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 1-112
Cow position:
Alignm length: 116
Alignm identity: 99
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 18, 94

Conread position: 1-127
Cow position:
Alignm length: 127
Alignm identity: 101
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 1-130
Cow position:
Alignm length: 132
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 37

Conread position: 1-131
Cow position:
Alignm length: 136
Alignm identity: 112
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 18, 106

Conread position: 1-134
Cow position:
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 1-134
Cow position:
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 104

Conread position: 1-134
Cow position:
Alignm length: 135
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 92, 48

Conread position: 1-134
Cow position:
Alignm length: 138
Alignm identity: 109
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 23, 106

Conread position: 1-134
Cow position:
Alignm length: 136
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 104

Conread position: 1-134
Cow position:
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 1-134
Cow position:
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 1-134
Cow position:
Alignm length: 134
Alignm identity: 108
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 1-134
Cow position:
Alignm length: 136
Alignm identity: 109
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 22, 104

Conread position: 1-134
Cow position:
Alignm length: 134
Alignm identity: 109
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 0

Conread position: 1-134
Cow position:
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 102

Conread position: 1-134
Cow position:
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 108, 0

Conread position: 1-146
Cow position:
Alignm length: 149
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 16, 104

Conread position: 2-95
Cow position:
Alignm length: 94
Alignm identity: 84
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 2-99
Cow position:
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 2-99
Cow position:
Alignm length: 98
Alignm identity: 88
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 2-99
Cow position:
Alignm length: 100
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 3-95
Cow position:
Alignm length: 93
Alignm identity: 81
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 3-98
Cow position:
Alignm length: 96
Alignm identity: 84
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 3-99
Cow position:
Alignm length: 97
Alignm identity: 83
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 3-99
Cow position:
Alignm length: 98
Alignm identity: 85
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 3-103
Cow position:
Alignm length: 102
Alignm identity: 93
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 98, 88

Conread position: 4-97
Cow position:
Alignm length: 94
Alignm identity: 85
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 86, 0

Conread position: 4-98
Cow position:
Alignm length: 95
Alignm identity: 83
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 4-99
Cow position:
Alignm length: 97
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 90, 18

Conread position: 4-134
Cow position:
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 88

Conread position: 5-99
Cow position:
Alignm length: 95
Alignm identity: 85
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 5-99
Cow position:
Alignm length: 95
Alignm identity: 81
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 6-93
Cow position:
Alignm length: 88
Alignm identity: 79
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 6-98
Cow position:
Alignm length: 93
Alignm identity: 84
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 6-98
Cow position:
Alignm length: 93
Alignm identity: 82
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 6-99
Cow position:
Alignm length: 94
Alignm identity: 85
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 6-99
Cow position:
Alignm length: 94
Alignm identity: 83
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 7-99
Cow position:
Alignm length: 93
Alignm identity: 82
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 7-102
Cow position:
Alignm length: 96
Alignm identity: 83
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 7-103
Cow position:
Alignm length: 98
Alignm identity: 86
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 92, 17

Conread position: 7-110
Cow position:
Alignm length: 104
Alignm identity: 90
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 96, 0

Conread position: 8-99
Cow position:
Alignm length: 92
Alignm identity: 80
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 9-99
Cow position:
Alignm length: 91
Alignm identity: 79
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 11-95
Cow position:
Alignm length: 85
Alignm identity: 75
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-98
Cow position:
Alignm length: 87
Alignm identity: 78
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 13-99
Cow position:
Alignm length: 87
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position:
Alignm length: 88
Alignm identity: 80
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 13-99
Cow position:
Alignm length: 87
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position:
Alignm length: 87
Alignm identity: 78
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position:
Alignm length: 87
Alignm identity: 80
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 13-99
Cow position:
Alignm length: 87
Alignm identity: 79
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 13-109
Cow position:
Alignm length: 97
Alignm identity: 85
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 13-134
Cow position:
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 82, 91

Conread position: 13-134
Cow position:
Alignm length: 122
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 13-135
Cow position:
Alignm length: 123
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 15-133
Cow position:
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 100, 114

Show alignments to all cow chromosomes.