Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010070E04.5 |
| Conread position: | 326-696 |
| Cow position: | chr1:76781668-76782030 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 327-713 |
| Cow position: | chr1:92045173-92045536 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 328-508 |
| Cow position: | chr1:24751672-24751493 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 331-689 |
| Cow position: | chr1:43589110-43588765 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 331-700 |
| Cow position: | chr1:78201070-78201435 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 331-713 |
| Cow position: | chr1:44097031-44097397 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 331-728 |
| Cow position: | chr1:42060287-42059912 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 331-764 |
| Cow position: | chr1:60891215-60890790 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 331-765 |
| Cow position: | chr1:54485951-54486374 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 195 |
| Conread position: | 332-691 |
| Cow position: | chr1:13565411-13565063 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 345-564 |
| Cow position: | chr1:46345755-46345537 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 345-748 |
| Cow position: | chr1:76457733-76458109 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 206, 49 |
| Conread position: | 359-708 |
| Cow position: | chr1:45880261-45879907 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 190, 86 |
| Conread position: | 359-713 |
| Cow position: | chr1:89096912-89096577 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 187, 75 |
| Conread position: | 365-631 |
| Cow position: | chr1:77954363-77954624 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 184, 75 |
| Conread position: | 365-690 |
| Cow position: | chr1:32959086-32958773 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 194, 77 |
| Conread position: | 365-711 |
| Cow position: | chr1:24931956-24931608 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 205 |
| Conread position: | 368-574 |
| Cow position: | chr1:38335230-38335436 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 98, 60 |
| Conread position: | 370-784 |
| Cow position: | chr1:73688845-73688438 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 394-662 |
| Cow position: | chr1:55167993-55167730 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 203, 50 |
| Conread position: | 413-765 |
| Cow position: | chr1:87736938-87737292 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 414-694 |
| Cow position: | chr1:15266343-15266070 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 60, 74 |
| Conread position: | 433-685 |
| Cow position: | chr1:31660482-31660730 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 152 |
| Conread position: | 443-734 |
| Cow position: | chr1:46883521-46883810 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 182 |
| Conread position: | 456-765 |
| Cow position: | chr1:45181356-45181652 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 237, 78 |
| Conread position: | 460-765 |
| Cow position: | chr1:27311852-27312161 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 91, 82 |
| Conread position: | 483-765 |
| Cow position: | chr1:13696936-13696657 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 124 |
| Conread position: | 491-765 |
| Cow position: | chr1:91032311-91032586 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 492-765 |
| Cow position: | chr1:66599923-66599646 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 514-765 |
| Cow position: | chr1:46633678-46633433 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 37, 108 |
| Conread position: | 534-763 |
| Cow position: | chr1:17622994-17623222 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 84 |
| Conread position: | 635-765 |
| Cow position: | chr1:25699733-25699602 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 650-765 |
| Cow position: | chr1:40257084-40256967 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 654-935 |
| Cow position: | chr1:74009292-74009578 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 665-947 |
| Cow position: | chr1:1515639-1515920 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 707-887 |
| Cow position: | chr1:24750930-24750750 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 713-935 |
| Cow position: | chr1:76783317-76783542 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.