Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010070E04.5 |
| Conread position: | 305-567 |
| Cow position: | chr3:29496956-29497220 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 7, 122 |
| Conread position: | 321-574 |
| Cow position: | chr3:75117548-75117798 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 104 |
| Conread position: | 326-761 |
| Cow position: | chr3:548643-548227 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 326-776 |
| Cow position: | chr3:81527032-81527473 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 327-523 |
| Cow position: | chr3:60536076-60535876 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 124 |
| Conread position: | 327-972 |
| Cow position: | chr3:51415212-51414606 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 425 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 111 |
| Conread position: | 328-500 |
| Cow position: | chr3:14767858-14767684 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 329-715 |
| Cow position: | chr3:28717248-28716866 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 329-759 |
| Cow position: | chr3:19227811-19227385 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 329-765 |
| Cow position: | chr3:13508808-13508371 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 120 |
| Conread position: | 330-567 |
| Cow position: | chr3:6887069-6887309 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 330-1000 |
| Cow position: | chr3:32197859-32198516 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 104 |
| Conread position: | 331-492 |
| Cow position: | chr3:41407632-41407795 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 331-696 |
| Cow position: | chr3:43621077-43620721 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 331-696 |
| Cow position: | chr3:73427669-73427320 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 331-739 |
| Cow position: | chr3:26803004-26803414 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 331-749 |
| Cow position: | chr3:83998751-83998345 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 58 |
| Conread position: | 331-755 |
| Cow position: | chr3:48516919-48517342 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 139 |
| Conread position: | 331-770 |
| Cow position: | chr3:74407087-74406654 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 331-935 |
| Cow position: | chr3:69809964-69810550 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 381 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 331-969 |
| Cow position: | chr3:553022-552385 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 182 |
| Conread position: | 332-776 |
| Cow position: | chr3:54564008-54563588 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 14, 98 |
| Conread position: | 337-579 |
| Cow position: | chr3:9188448-9188204 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 337-588 |
| Cow position: | chr3:6534665-6534412 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 130 |
| Conread position: | 337-767 |
| Cow position: | chr3:62740445-62740032 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 365-762 |
| Cow position: | chr3:84871770-84872148 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 376-749 |
| Cow position: | chr3:59298678-59298331 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 343, 97 |
| Conread position: | 390-701 |
| Cow position: | chr3:29309117-29309413 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 77, 54 |
| Conread position: | 404-828 |
| Cow position: | chr3:11134691-11135097 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 405-765 |
| Cow position: | chr3:34233135-34233473 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 146, 38 |
| Conread position: | 414-750 |
| Cow position: | chr3:79197563-79197911 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 426-776 |
| Cow position: | chr3:60492517-60492187 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 123, 21 |
| Conread position: | 428-737 |
| Cow position: | chr3:3253233-3253547 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 428-838 |
| Cow position: | chr3:2810581-2810980 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 429-757 |
| Cow position: | chr3:19958031-19958350 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 11 |
| Conread position: | 483-763 |
| Cow position: | chr3:30961235-30960948 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 485-998 |
| Cow position: | chr3:14767496-14766969 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 502-695 |
| Cow position: | chr3:27887917-27888107 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 517-734 |
| Cow position: | chr3:52853613-52853828 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 598-766 |
| Cow position: | chr3:39204529-39204691 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 604-738 |
| Cow position: | chr3:75117795-75117925 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 115, 19 |
| Conread position: | 606-765 |
| Cow position: | chr3:29308715-29308873 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 654-1000 |
| Cow position: | chr3:11196480-11196832 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 181, 93 |
Show alignments to all cow chromosomes.