Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01D120094.5 |
| Conread position: | 27-298 |
| Cow position: | chr16:29030485-29030760 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 144, 45 |
| Conread position: | 29-400 |
| Cow position: | chr16:42052453-42052079 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 29-444 |
| Cow position: | chr16:19714955-19714528 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 140, 72 |
| Conread position: | 29-518 |
| Cow position: | chr16:140398-140898 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 30-214 |
| Cow position: | chr16:42741964-42741784 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 30-302 |
| Cow position: | chr16:55650599-55650872 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 222, 71 |
| Conread position: | 30-376 |
| Cow position: | chr16:28876149-28876499 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 30-444 |
| Cow position: | chr16:29677385-29676964 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 30-609 |
| Cow position: | chr16:25256426-25257007 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 385 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 30-828 |
| Cow position: | chr16:49258733-49257970 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 31-497 |
| Cow position: | chr16:16228279-16228756 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 31-648 |
| Cow position: | chr16:28234778-28234175 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 41 |
| Conread position: | 32-332 |
| Cow position: | chr16:42106769-42107075 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 32-456 |
| Cow position: | chr16:32933720-32934158 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 34-708 |
| Cow position: | chr16:28157482-28158164 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 57-463 |
| Cow position: | chr16:20256373-20255961 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 113, 44 |
| Conread position: | 58-422 |
| Cow position: | chr16:5886636-5886995 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 99-809 |
| Cow position: | chr16:15368166-15368901 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 394 |
| Conread position: | 126-733 |
| Cow position: | chr16:49957207-49956586 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 395 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 141-807 |
| Cow position: | chr16:25151623-25152301 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 192-635 |
| Cow position: | chr16:44085923-44086362 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 293 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 231-594 |
| Cow position: | chr16:18689062-18688706 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 19, 78 |
| Conread position: | 251-828 |
| Cow position: | chr16:16686801-16687397 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 258-827 |
| Cow position: | chr16:36234154-36233592 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 344 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 310-665 |
| Cow position: | chr16:42741164-42741518 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 37, 159 |
| Conread position: | 361-828 |
| Cow position: | chr16:29031090-29031549 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 71 |
| Conread position: | 379-706 |
| Cow position: | chr16:42107101-42107429 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 219, 85 |
| Conread position: | 379-808 |
| Cow position: | chr16:32934155-32934597 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 97 |
| Conread position: | 536-808 |
| Cow position: | chr16:9928311-9928594 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 658-816 |
| Cow position: | chr16:18688668-18688510 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 121 |
Show alignments to all cow chromosomes.