Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01D120094.5 |
| Conread position: | 26-772 |
| Cow position: | chr21:9890494-9891224 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 78 |
| Conread position: | 29-217 |
| Cow position: | chr21:18821543-18821353 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 29-220 |
| Cow position: | chr21:12629282-12629087 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 29-409 |
| Cow position: | chr21:4454868-4455260 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 31, 75 |
| Conread position: | 29-442 |
| Cow position: | chr21:3425270-3425696 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 29-456 |
| Cow position: | chr21:4075615-4076056 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 29-468 |
| Cow position: | chr21:13125197-13124754 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 29-648 |
| Cow position: | chr21:2531355-2530744 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 407 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 30-435 |
| Cow position: | chr21:2707903-2708303 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 139, 29 |
| Conread position: | 30-444 |
| Cow position: | chr21:3799625-3799197 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 35, 74 |
| Conread position: | 30-760 |
| Cow position: | chr21:3982935-3983667 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 30-808 |
| Cow position: | chr21:28873120-28873923 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 31-506 |
| Cow position: | chr21:18284117-18284604 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 319 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 31-544 |
| Cow position: | chr21:9869259-9869777 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 340 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 186, 70 |
| Conread position: | 31-550 |
| Cow position: | chr21:27560562-27561075 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 32-575 |
| Cow position: | chr21:23808387-23808952 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 48-319 |
| Cow position: | chr21:34260332-34260058 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 48-468 |
| Cow position: | chr21:2790114-2789690 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 49-456 |
| Cow position: | chr21:29082853-29083272 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 55 |
| Conread position: | 58-794 |
| Cow position: | chr21:2543141-2542394 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 43 |
| Conread position: | 91-518 |
| Cow position: | chr21:34291631-34292065 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 126-455 |
| Cow position: | chr21:3357935-3357598 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 185 |
| Conread position: | 160-544 |
| Cow position: | chr21:13010216-13010598 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 161-581 |
| Cow position: | chr21:13161913-13162314 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 161-806 |
| Cow position: | chr21:15586097-15585486 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 251-828 |
| Cow position: | chr21:18821341-18820758 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 127 |
| Conread position: | 252-454 |
| Cow position: | chr21:33753705-33753909 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 283-826 |
| Cow position: | chr21:357810-358363 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 475-809 |
| Cow position: | chr21:2415370-2415703 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 120, 98 |
| Conread position: | 538-808 |
| Cow position: | chr21:2500920-2501190 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 23, 19 |
| Conread position: | 595-825 |
| Cow position: | chr21:23809018-23809246 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 682-827 |
| Cow position: | chr21:4182884-4183030 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 45 |
Show alignments to all cow chromosomes.