Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01D120094.5 |
| Conread position: | 12-454 |
| Cow position: | chr28:5822586-5823032 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 56, 92 |
| Conread position: | 29-214 |
| Cow position: | chr28:2590599-2590784 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 127, 72 |
| Conread position: | 29-451 |
| Cow position: | chr28:4384748-4384317 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 29-462 |
| Cow position: | chr28:22543529-22543971 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 30-425 |
| Cow position: | chr28:5763965-5764366 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 65 |
| Conread position: | 30-476 |
| Cow position: | chr28:10292708-10293157 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 10 |
| Conread position: | 30-828 |
| Cow position: | chr28:5811266-5812070 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 73 |
| Conread position: | 30-828 |
| Cow position: | chr28:21357575-21358380 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 587 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 31-666 |
| Cow position: | chr28:21324313-21324929 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 32-408 |
| Cow position: | chr28:26005984-26006375 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 75 |
| Conread position: | 33-363 |
| Cow position: | chr28:15572300-15572635 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 32, 71 |
| Conread position: | 33-566 |
| Cow position: | chr28:12245934-12246461 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 357 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 38-248 |
| Cow position: | chr28:24666163-24666376 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 61 |
| Conread position: | 55-672 |
| Cow position: | chr28:25706638-25706019 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 46 |
| Conread position: | 57-449 |
| Cow position: | chr28:21928012-21928411 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 64-828 |
| Cow position: | chr28:7815866-7816617 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 37 |
| Conread position: | 76-808 |
| Cow position: | chr28:17313557-17314300 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 25 |
| Conread position: | 116-733 |
| Cow position: | chr28:30563849-30564497 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 410 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 102 |
| Conread position: | 161-609 |
| Cow position: | chr28:2924677-2925115 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 244-433 |
| Cow position: | chr28:8722564-8722382 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 251-808 |
| Cow position: | chr28:25784306-25784860 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 266-828 |
| Cow position: | chr28:24666423-24666974 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 271-586 |
| Cow position: | chr28:7791924-7791613 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 475-805 |
| Cow position: | chr28:1388351-1388024 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 123, 95 |
| Conread position: | 524-828 |
| Cow position: | chr28:10620049-10619740 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 208 |
| Conread position: | 526-808 |
| Cow position: | chr28:26006522-26006808 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 70, 116 |
| Conread position: | 526-828 |
| Cow position: | chr28:8722384-8722097 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 142, 70 |
| Conread position: | 554-828 |
| Cow position: | chr28:2990877-2990604 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 597-809 |
| Cow position: | chr28:7791104-7790889 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 675-807 |
| Cow position: | chr28:2925129-2925263 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 49 |
Show alignments to all cow chromosomes.