Cow genome map

Conread name: Ss1.1-Utr1-UTR01D120094.5

Conread position: 10-619
Cow position: chrX:22776415-22777009 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 16

Conread position: 19-389
Cow position: chrX:29784904-29784528 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 247
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 165, 82

Conread position: 20-444
Cow position: chrX:21057876-21058312 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 287
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 41, 24

Conread position: 21-635
Cow position: chrX:6911369-6910754 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 83

Conread position: 23-444
Cow position: chrX:21599069-21599502 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 289
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 39, 81

Conread position: 26-442
Cow position: chrX:30047716-30047292 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 277
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 78

Conread position: 26-463
Cow position: chrX:21291075-21290627 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 28-504
Cow position: chrX:26898245-26897780 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 306
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 144, 31

Conread position: 29-328
Cow position: chrX:20802472-20802776 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 28, 75

Conread position: 29-444
Cow position: chrX:30991552-30991127 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 276
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 142, 72

Conread position: 29-444
Cow position: chrX:35016201-35016629 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 29-445
Cow position: chrX:24123694-24123267 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 288
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 31, 74

Conread position: 29-451
Cow position: chrX:39716207-39716648 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 292
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 32, 75

Conread position: 29-456
Cow position: chrX:13008220-13007783 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 75

Conread position: 30-567
Cow position: chrX:31033791-31034335 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 71

Conread position: 30-619
Cow position: chrX:24137994-24137406 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 78

Conread position: 30-638
Cow position: chrX:11670098-11669478 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 74

Conread position: 30-648
Cow position: chrX:25331476-25332090 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 49

Conread position: 30-708
Cow position: chrX:42451128-42450445 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 29

Conread position: 30-828
Cow position: chrX:21791034-21791833 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 26

Conread position: 31-444
Cow position: chrX:21634165-21633737 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 75

Conread position: 31-451
Cow position: chrX:26503591-26504024 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 72

Conread position: 31-619
Cow position: chrX:8907463-8908034 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 382
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 30, 73

Conread position: 31-828
Cow position: chrX:35015217-35015997 (view UCSC Genome Browser custom track)
Alignm length: 815
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 39

Conread position: 32-387
Cow position: chrX:17672516-17672149 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 253
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 26, 78

Conread position: 32-454
Cow position: chrX:30372017-30371594 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 266
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 23, 43

Conread position: 32-672
Cow position: chrX:22133615-22132960 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 408
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 25, 74

Conread position: 33-828
Cow position: chrX:6362472-6361644 (view UCSC Genome Browser custom track)
Alignm length: 838
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 70

Conread position: 48-468
Cow position: chrX:5836262-5835827 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 56

Conread position: 58-643
Cow position: chrX:26837659-26838237 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 364
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 71, 47

Conread position: 58-670
Cow position: chrX:35956256-35955623 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 43

Conread position: 118-456
Cow position: chrX:26633489-26633137 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 228
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 53, 198

Conread position: 161-828
Cow position: chrX:6284741-6284074 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 66

Conread position: 174-645
Cow position: chrX:30144980-30144497 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 319
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 76, 101

Conread position: 208-808
Cow position: chrX:28552520-28553125 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 167

Conread position: 208-826
Cow position: chrX:21585520-21586139 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 277

Conread position: 251-828
Cow position: chrX:2537865-2537293 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 50

Conread position: 382-587
Cow position: chrX:17670480-17670266 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 74, 98

Conread position: 400-808
Cow position: chrX:31371659-31372063 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 84

Conread position: 440-828
Cow position: chrX:25041688-25041304 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 275
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 7, 38

Conread position: 553-827
Cow position: chrX:31034548-31034826 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 205
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 45, 116

Conread position: 622-815
Cow position: chrX:16018205-16018012 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 92, 102

Conread position: 657-819
Cow position: chrX:17670006-17669844 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 15

Show alignments to all cow chromosomes.