Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 1-221 |
| Cow position: | chr1:79637782-79637565 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 1-276 |
| Cow position: | chr1:72134053-72134327 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 1-625 |
| Cow position: | chr1:89478201-89478826 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 5-572 |
| Cow position: | chr1:52322925-52323478 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 115 |
| Conread position: | 6-271 |
| Cow position: | chr1:42057745-42058007 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 17-233 |
| Cow position: | chr1:40906793-40907007 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 53-393 |
| Cow position: | chr1:87460350-87460018 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 81 |
| Conread position: | 55-237 |
| Cow position: | chr1:53363914-53364097 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 119 |
| Conread position: | 55-277 |
| Cow position: | chr1:72118266-72118489 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 30, 119 |
| Conread position: | 59-224 |
| Cow position: | chr1:77122350-77122185 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 89, 115 |
| Conread position: | 64-329 |
| Cow position: | chr1:27350212-27350467 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 175, 42 |
| Conread position: | 74-266 |
| Cow position: | chr1:44087517-44087325 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 125, 98 |
| Conread position: | 275-463 |
| Cow position: | chr1:72119199-72119385 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 277-553 |
| Cow position: | chr1:69288262-69287988 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 193, 15 |
| Conread position: | 277-657 |
| Cow position: | chr1:72134718-72135092 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 16 |
| Conread position: | 279-487 |
| Cow position: | chr1:31594245-31594452 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 183, 31 |
| Conread position: | 279-526 |
| Cow position: | chr1:82346752-82346497 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 103, 90 |
| Conread position: | 279-576 |
| Cow position: | chr1:76704060-76703765 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 279-584 |
| Cow position: | chr1:69059724-69060026 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 183, 90 |
| Conread position: | 279-639 |
| Cow position: | chr1:25887846-25887490 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 126, 91 |
| Conread position: | 279-646 |
| Cow position: | chr1:42177079-42176737 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 199, 68 |
| Conread position: | 279-655 |
| Cow position: | chr1:82408622-82408245 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 282-657 |
| Cow position: | chr1:67903138-67902770 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 55 |
| Conread position: | 286-464 |
| Cow position: | chr1:88532813-88532643 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 286-666 |
| Cow position: | chr1:61732354-61732726 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 31 |
| Conread position: | 302-648 |
| Cow position: | chr1:29032583-29032918 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 173, 68 |
| Conread position: | 303-655 |
| Cow position: | chr1:54366465-54366125 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 319-565 |
| Cow position: | chr1:28802086-28801836 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 63 |
| Conread position: | 350-565 |
| Cow position: | chr1:89900335-89900111 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 350-656 |
| Cow position: | chr1:67285849-67286164 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 11, 177 |
| Conread position: | 350-716 |
| Cow position: | chr1:40514140-40513777 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 379-657 |
| Cow position: | chr1:34688738-34689007 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 166, 130 |
| Conread position: | 380-552 |
| Cow position: | chr1:28722202-28722378 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 142 |
| Conread position: | 380-564 |
| Cow position: | chr1:59672472-59672658 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 380-565 |
| Cow position: | chr1:18406789-18406600 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 11, 132 |
| Conread position: | 380-565 |
| Cow position: | chr1:38414220-38414409 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-565 |
| Cow position: | chr1:88634779-88634968 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-565 |
| Cow position: | chr1:101858579-101858390 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-566 |
| Cow position: | chr1:69536321-69536507 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 129 |
| Conread position: | 380-605 |
| Cow position: | chr1:45096985-45097215 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-638 |
| Cow position: | chr1:42289809-42290061 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 134 |
| Conread position: | 380-652 |
| Cow position: | chr1:62854430-62854152 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 381-616 |
| Cow position: | chr1:53364084-53364320 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 390-565 |
| Cow position: | chr1:52233685-52233507 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 392-562 |
| Cow position: | chr1:39543136-39543304 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 145, 115 |
| Conread position: | 392-607 |
| Cow position: | chr1:101149250-101149464 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 80, 46 |
| Conread position: | 392-643 |
| Cow position: | chr1:33711460-33711722 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 80, 102 |
| Conread position: | 392-657 |
| Cow position: | chr1:55324131-55323864 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 74, 117 |
| Conread position: | 392-657 |
| Cow position: | chr1:89740845-89740573 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 83, 197 |
| Conread position: | 394-566 |
| Cow position: | chr1:77122181-77122010 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 12, 118 |
| Conread position: | 394-640 |
| Cow position: | chr1:87244204-87244457 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 50, 117 |
| Conread position: | 402-655 |
| Cow position: | chr1:11863875-11863616 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 403-639 |
| Cow position: | chr1:23050048-23050281 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 67, 116 |
| Conread position: | 433-656 |
| Cow position: | chr1:37420541-37420317 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 474-639 |
| Cow position: | chr1:72119640-72119795 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 35 |
Show alignments to all cow chromosomes.