Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 4-221 |
| Cow position: | chr15:24792832-24793047 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 5-371 |
| Cow position: | chr15:16591331-16590977 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 17-197 |
| Cow position: | chr15:38958361-38958180 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 158 |
| Conread position: | 17-224 |
| Cow position: | chr15:35649417-35649208 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 15, 163 |
| Conread position: | 98-363 |
| Cow position: | chr15:49675512-49675771 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 146-276 |
| Cow position: | chr15:36628281-36628152 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 251-656 |
| Cow position: | chr15:38958163-38957767 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 11 |
| Conread position: | 275-498 |
| Cow position: | chr15:27065161-27064940 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 191, 95 |
| Conread position: | 275-655 |
| Cow position: | chr15:36627725-36627345 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 95 |
| Conread position: | 275-657 |
| Cow position: | chr15:21816860-21816480 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 93 |
| Conread position: | 279-552 |
| Cow position: | chr15:40104345-40104618 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 279-573 |
| Cow position: | chr15:1236314-1236612 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 191, 91 |
| Conread position: | 279-657 |
| Cow position: | chr15:4631035-4630654 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 182, 58 |
| Conread position: | 279-666 |
| Cow position: | chr15:15266901-15266518 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 282 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 279-692 |
| Cow position: | chr15:323813-324225 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 181, 90 |
| Conread position: | 280-657 |
| Cow position: | chr15:10479798-10479430 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 173, 90 |
| Conread position: | 281-456 |
| Cow position: | chr15:684603-684776 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 286-657 |
| Cow position: | chr15:12613971-12614330 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 45 |
| Conread position: | 291-559 |
| Cow position: | chr15:12364300-12364565 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 71 |
| Conread position: | 293-646 |
| Cow position: | chr15:21447977-21448325 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 173, 18 |
| Conread position: | 310-526 |
| Cow position: | chr15:17683785-17683564 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 160, 60 |
| Conread position: | 325-512 |
| Cow position: | chr15:51799416-51799605 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 147, 45 |
| Conread position: | 357-497 |
| Cow position: | chr15:16590891-16590753 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 373-535 |
| Cow position: | chr15:13520682-13520840 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 375-649 |
| Cow position: | chr15:32680581-32680303 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 95, 140 |
| Conread position: | 379-657 |
| Cow position: | chr15:52635145-52635427 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 91, 75 |
| Conread position: | 380-565 |
| Cow position: | chr15:6077744-6077933 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 380-565 |
| Cow position: | chr15:21960519-21960708 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-614 |
| Cow position: | chr15:6371845-6371605 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-640 |
| Cow position: | chr15:6651036-6650783 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 143 |
| Conread position: | 386-645 |
| Cow position: | chr15:53338044-53338310 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 76, 132 |
| Conread position: | 386-648 |
| Cow position: | chr15:36641624-36641882 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 389-634 |
| Cow position: | chr15:4677513-4677758 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 123 |
| Conread position: | 391-657 |
| Cow position: | chr15:44827806-44828075 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 154 |
| Conread position: | 392-565 |
| Cow position: | chr15:3038481-3038305 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 78, 119 |
| Conread position: | 392-565 |
| Cow position: | chr15:25135444-25135268 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 392-565 |
| Cow position: | chr15:38195105-38195281 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 392-611 |
| Cow position: | chr15:32692539-32692761 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 122 |
| Conread position: | 392-640 |
| Cow position: | chr15:6278244-6277992 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 80, 117 |
| Conread position: | 392-640 |
| Cow position: | chr15:36647937-36648177 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 392-643 |
| Cow position: | chr15:10788081-10787823 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 129 |
| Conread position: | 392-648 |
| Cow position: | chr15:6387302-6387043 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 392-656 |
| Cow position: | chr15:370683-370411 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 70, 108 |
| Conread position: | 392-657 |
| Cow position: | chr15:14583614-14583338 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 116 |
| Conread position: | 392-657 |
| Cow position: | chr15:24793061-24793316 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 76, 121 |
| Conread position: | 394-565 |
| Cow position: | chr15:7895172-7895000 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 115 |
| Conread position: | 394-640 |
| Cow position: | chr15:4794694-4794945 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 71, 118 |
| Conread position: | 395-657 |
| Cow position: | chr15:8098476-8098746 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 67, 121 |
| Conread position: | 401-648 |
| Cow position: | chr15:1763088-1763340 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 8, 121 |
| Conread position: | 402-657 |
| Cow position: | chr15:35649194-35648946 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 403-520 |
| Cow position: | chr15:49675774-49675893 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 419-650 |
| Cow position: | chr15:7927657-7927885 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 91 |
Show alignments to all cow chromosomes.