Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 1-541 |
| Cow position: | chr16:25152111-25152638 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 4-225 |
| Cow position: | chr16:29031353-29031560 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 5-209 |
| Cow position: | chr16:15368707-15368915 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 17-363 |
| Cow position: | chr16:16687199-16687537 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 157 |
| Conread position: | 17-656 |
| Cow position: | chr16:32934419-32935067 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 162 |
| Conread position: | 26-238 |
| Cow position: | chr16:49258150-49257945 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 54-198 |
| Cow position: | chr16:5887061-5887206 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 148-310 |
| Cow position: | chr16:42051887-42051728 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 156-391 |
| Cow position: | chr16:49237059-49236826 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 178-651 |
| Cow position: | chr16:44673449-44673915 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 275-627 |
| Cow position: | chr16:5888000-5888355 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 275-639 |
| Cow position: | chr16:36233062-36232697 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 55 |
| Conread position: | 275-660 |
| Cow position: | chr16:49955972-49955602 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 279-433 |
| Cow position: | chr16:31717417-31717265 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 279-549 |
| Cow position: | chr16:14422276-14422548 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 169, 65 |
| Conread position: | 280-650 |
| Cow position: | chr16:29981815-29982180 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 32 |
| Conread position: | 281-657 |
| Cow position: | chr16:334542-334905 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 185, 55 |
| Conread position: | 313-576 |
| Cow position: | chr16:40887673-40887422 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 231, 23 |
| Conread position: | 344-571 |
| Cow position: | chr16:13650792-13650562 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 380-565 |
| Cow position: | chr16:11051834-11052022 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 380-614 |
| Cow position: | chr16:39818274-39818513 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-617 |
| Cow position: | chr16:19714196-19713958 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 130 |
| Conread position: | 380-640 |
| Cow position: | chr16:29676657-29676388 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-640 |
| Cow position: | chr16:36282062-36282313 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 384-657 |
| Cow position: | chr16:29031560-29031833 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 392-551 |
| Cow position: | chr16:28234000-28233849 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 153, 86 |
| Conread position: | 392-559 |
| Cow position: | chr16:15368937-15369102 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 151, 117 |
| Conread position: | 392-640 |
| Cow position: | chr16:20255646-20255390 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 392-656 |
| Cow position: | chr16:49257946-49257679 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 86, 120 |
| Conread position: | 402-657 |
| Cow position: | chr16:18688468-18688204 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 404-657 |
| Cow position: | chr16:25084284-25084538 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 111 |
| Conread position: | 405-657 |
| Cow position: | chr16:49236450-49236196 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 406-657 |
| Cow position: | chr16:16687536-16687786 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 60, 105 |
Show alignments to all cow chromosomes.