Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 1-664 |
| Cow position: | chr2:25243875-25244527 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 3-276 |
| Cow position: | chr2:32435631-32435368 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 4-211 |
| Cow position: | chr2:7900708-7900914 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 4-238 |
| Cow position: | chr2:15579313-15579078 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 5-238 |
| Cow position: | chr2:6877164-6877394 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 22-657 |
| Cow position: | chr2:783198-782584 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 111 |
| Conread position: | 29-216 |
| Cow position: | chr2:51306185-51306002 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 124, 79 |
| Conread position: | 53-272 |
| Cow position: | chr2:24394220-24393998 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 111, 122 |
| Conread position: | 54-211 |
| Cow position: | chr2:203396-203241 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 274-657 |
| Cow position: | chr2:7210201-7210575 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 183, 91 |
| Conread position: | 275-450 |
| Cow position: | chr2:32434916-32434747 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 275-647 |
| Cow position: | chr2:54650014-54649664 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 196, 95 |
| Conread position: | 275-657 |
| Cow position: | chr2:85069472-85069088 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 67 |
| Conread position: | 277-654 |
| Cow position: | chr2:32388329-32388710 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 88 |
| Conread position: | 279-463 |
| Cow position: | chr2:74392733-74392551 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 279-490 |
| Cow position: | chr2:769582-769372 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 281-576 |
| Cow position: | chr2:73190637-73190931 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 197, 89 |
| Conread position: | 281-655 |
| Cow position: | chr2:20904335-20903980 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 197, 80 |
| Conread position: | 310-657 |
| Cow position: | chr2:63293763-63293421 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 162, 60 |
| Conread position: | 313-565 |
| Cow position: | chr2:8777624-8777874 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 151, 57 |
| Conread position: | 319-648 |
| Cow position: | chr2:3729561-3729879 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 148, 51 |
| Conread position: | 352-565 |
| Cow position: | chr2:46945392-46945610 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 5, 26 |
| Conread position: | 368-552 |
| Cow position: | chr2:40244730-40244917 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 17, 145 |
| Conread position: | 372-656 |
| Cow position: | chr2:202798-202507 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 138 |
| Conread position: | 374-654 |
| Cow position: | chr2:36032198-36031915 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 380-565 |
| Cow position: | chr2:44166442-44166258 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 103 |
| Conread position: | 380-657 |
| Cow position: | chr2:75250664-75250918 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 381-657 |
| Cow position: | chr2:7900930-7901211 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 74, 134 |
| Conread position: | 386-655 |
| Cow position: | chr2:16288123-16288398 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 8, 130 |
| Conread position: | 387-657 |
| Cow position: | chr2:47604924-47604649 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 126 |
| Conread position: | 389-678 |
| Cow position: | chr2:26655380-26655105 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 72, 84 |
| Conread position: | 390-614 |
| Cow position: | chr2:2102563-2102335 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 124 |
| Conread position: | 391-502 |
| Cow position: | chr2:28622192-28622081 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 392-640 |
| Cow position: | chr2:2363047-2363302 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 30 |
| Conread position: | 392-640 |
| Cow position: | chr2:5481740-5481486 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 392-652 |
| Cow position: | chr2:14560050-14560319 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 78, 123 |
| Conread position: | 392-657 |
| Cow position: | chr2:1673762-1673502 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 75, 114 |
| Conread position: | 392-657 |
| Cow position: | chr2:32654224-32654498 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 122 |
| Conread position: | 394-687 |
| Cow position: | chr2:41148951-41149233 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 400-657 |
| Cow position: | chr2:6879068-6879325 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 75, 54 |
| Conread position: | 403-657 |
| Cow position: | chr2:32459122-32458865 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 114 |
| Conread position: | 404-657 |
| Cow position: | chr2:6959637-6959895 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 71, 110 |
| Conread position: | 406-657 |
| Cow position: | chr2:6877397-6877640 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 109 |
Show alignments to all cow chromosomes.