Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 1-238 |
| Cow position: | chr28:21358169-21358404 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 4-201 |
| Cow position: | chr28:26006620-26006814 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 17-238 |
| Cow position: | chr28:5811872-5812095 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 157 |
| Conread position: | 17-238 |
| Cow position: | chr28:10619937-10619715 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 31-204 |
| Cow position: | chr28:25784697-25784869 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 143 |
| Conread position: | 34-216 |
| Cow position: | chr28:2990784-2990602 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 168, 144 |
| Conread position: | 41-196 |
| Cow position: | chr28:17314148-17314301 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 59-194 |
| Cow position: | chr28:2925128-2925263 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 83, 115 |
| Conread position: | 264-511 |
| Cow position: | chr28:2925296-2925534 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 275-614 |
| Cow position: | chr28:25785192-25785508 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 270, 61 |
| Conread position: | 277-648 |
| Cow position: | chr28:26007323-26007676 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 55 |
| Conread position: | 279-522 |
| Cow position: | chr28:6658052-6657813 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 184, 52 |
| Conread position: | 279-666 |
| Cow position: | chr28:22827340-22827722 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 27 |
| Conread position: | 285-476 |
| Cow position: | chr28:22812180-22812362 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 297-573 |
| Cow position: | chr28:13721256-13721535 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 178, 68 |
| Conread position: | 303-565 |
| Cow position: | chr28:10464541-10464278 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 162, 48 |
| Conread position: | 317-564 |
| Cow position: | chr28:8044179-8043943 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 332-656 |
| Cow position: | chr28:34648280-34648592 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 386-648 |
| Cow position: | chr28:8722081-8721804 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 249 |
| Conread position: | 386-657 |
| Cow position: | chr28:2990588-2990308 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 387-648 |
| Cow position: | chr28:10619725-10619457 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 390-565 |
| Cow position: | chr28:15681300-15681478 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 122 |
| Conread position: | 391-655 |
| Cow position: | chr28:7790847-7790585 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 152, 122 |
| Conread position: | 392-514 |
| Cow position: | chr28:9157025-9156898 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 392-629 |
| Cow position: | chr28:4382002-4381752 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 155 |
| Conread position: | 392-639 |
| Cow position: | chr28:5812094-5812344 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 392-655 |
| Cow position: | chr28:21358403-21358669 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 82, 120 |
| Conread position: | 392-657 |
| Cow position: | chr28:21325172-21325444 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 82, 122 |
| Conread position: | 398-687 |
| Cow position: | chr28:5796212-5796506 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 118 |
| Conread position: | 404-655 |
| Cow position: | chr28:7816643-7816894 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 66, 96 |
Show alignments to all cow chromosomes.